Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_M11
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    26   1.4  
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb...    24   5.5  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    24   5.5  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    24   7.3  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    23   9.6  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    23   9.6  
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    23   9.6  

>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 141 WFFVYEVTSTKASRDMFKELLLSLVAALFAGFG 43
           W F+Y     +     F  LL++LV ++F GFG
Sbjct: 455 WGFMYVQLDVRFFYFTFPLLLITLVRSMFIGFG 487


>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 11  QSLPHXNKHKIPKPANKAATNDKSNSLNISLEAL 112
           +S+P    HK+ +P   A+ N +   L+ S+ +L
Sbjct: 253 KSIPRPLSHKLTRPRVTASGNSRRRPLSRSIHSL 286


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 101 EICSKSYFYHWWPPYLLVSGFC 36
           ++CS++Y  +WW    +  GFC
Sbjct: 546 QLCSENY--NWWWRSFITPGFC 565


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 180 LDVEKLPGLLATCTGSLIQFRDSFLWL 260
           L+ +K    LAT   SL+  +D+  WL
Sbjct: 827 LEGDKRKAFLATVEDSLVSSKDNLTWL 853


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 2   LTHQSLPHXNKHKIPKPANKAATNDK 79
           ++H  L H  KH++    N   TND+
Sbjct: 363 ISHTDLHHTFKHEVNSSNNYELTNDE 388


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 270 RSKIAIKMSLEIESMIRYTSPINPAVFPH 184
           RSK    +   IES +   S +NPAV P+
Sbjct: 743 RSKQGKMLFSAIESRVLEVSSLNPAVAPY 771


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = +1

Query: 121 NFVNEEPGREEYSYSEQQKG*MWKNCRVY 207
           NF++++  R  ++Y    +G + K C+++
Sbjct: 17  NFLSKDAVRNIFAYDNHLRGLVQKECKIH 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,307,125
Number of Sequences: 5004
Number of extensions: 24036
Number of successful extensions: 62
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)