Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_M11
(339 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0504 + 21535192-21535194,21535306-21535406,21536964-215370... 42 2e-04
02_04_0067 - 19425019-19425288,19425393-19425647,19425766-194259... 29 1.2
11_06_0527 + 24672649-24672707,24673459-24673817,24674366-246744... 27 3.8
12_01_0613 + 5060150-5060320,5062255-5062359,5064057-5064143,506... 27 5.0
07_01_0776 + 5983684-5983857,5983962-5984072,5984151-5984302,598... 27 5.0
06_01_1038 + 8153612-8153983,8154084-8154419,8154681-8154729,815... 26 6.6
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 26 8.7
07_03_1041 + 23468867-23469215,23469231-23469348,23470920-234710... 26 8.7
01_01_1019 + 8057784-8058983 26 8.7
>06_03_0504 +
21535192-21535194,21535306-21535406,21536964-21537042,
21537128-21537175
Length = 76
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = -1
Query: 216 TSPINPAVFPHXXXXXXXXXXXXTAWFFVYEVTSTKASRDMFKELLLSLVAALFAGFGIL 37
+SP+ +P TA FF+YE TS++ +R + KE+ + +A++F GFG L
Sbjct: 7 SSPVPVDWYPTLAVVMVAVGLMFTASFFIYEATSSRRNRSLAKEIATATIASVFLGFGSL 66
Query: 36 CLL 28
+L
Sbjct: 67 FVL 69
>02_04_0067 - 19425019-19425288,19425393-19425647,19425766-19425937,
19426069-19426302,19426523-19426656,19427663-19427746,
19428355-19428645,19428788-19429120,19429317-19429390,
19429464-19429644,19429993-19430096,19430232-19430392,
19430727-19431040,19431583-19431864,19432431-19432732,
19433176-19433266,19433368-19433421,19438917-19438993,
19439081-19439240,19439410-19439494,19439574-19440130
Length = 1404
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 139 PGREEYSYSEQQKG*MWKNCRVYWR 213
P R + EQ K +WK C YWR
Sbjct: 1117 PTRFPQKFREQLKACIWKQCLSYWR 1141
>11_06_0527 +
24672649-24672707,24673459-24673817,24674366-24674435,
24674656-24674730,24674731-24674846,24674975-24675006,
24675117-24675242,24675379-24675537,24675886-24675978,
24676069-24676236,24676388-24676486,24676603-24676820,
24676900-24676957,24677421-24677509,24677590-24677721,
24678000-24678122,24678568-24678666,24678774-24678965,
24679127-24679298,24679416-24679572,24679704-24679906,
24680105-24680246,24680324-24680484,24680585-24680701,
24680788-24680874
Length = 1101
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 95 CSKSYFYHWWPPYLLVSGFC 36
C YFYH Y LVSG C
Sbjct: 164 CKDEYFYHSSDAYSLVSGQC 183
>12_01_0613 +
5060150-5060320,5062255-5062359,5064057-5064143,
5064265-5064318,5064402-5064547,5064651-5064804,
5064891-5065028,5065454-5065527,5065615-5065756,
5066396-5066474,5067326-5067423
Length = 415
Score = 26.6 bits (56), Expect = 5.0
Identities = 19/82 (23%), Positives = 37/82 (45%)
Frame = +2
Query: 50 PANKAATNDKSNSLNISLEALVLVTS*TKNQAVKNIPIPSNKKVRCGKTAGFIGDVYRII 229
PA K +++SN L++ A + + + P +++R G GF+ + +++
Sbjct: 6 PAPKLQPDERSNLLSLLAAASRPLADIAADFLAR---FPLERRLRVGAALGFLLEDKKML 62
Query: 230 DSISRLIFMAILERNTIENKTN 295
RLI AIL ++ N
Sbjct: 63 HPTGRLIAFAILHQSYSSEPAN 84
>07_01_0776 +
5983684-5983857,5983962-5984072,5984151-5984302,
5984403-5984460,5984568-5984616,5984714-5984958,
5985129-5985206,5986016-5986246
Length = 365
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 93 FKELLLSLVAALFAGFGILCLLXWGR 16
+KE L+ L AA+F GI C+L GR
Sbjct: 303 WKETLILLGAAIFLAGGIECMLDAGR 328
>06_01_1038 +
8153612-8153983,8154084-8154419,8154681-8154729,
8155277-8155427,8156104-8156239,8157400-8157726
Length = 456
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 206 IGDVYRIIDSISRLIFMAILERNTIENKTNKTRQTQR 316
IGD+Y +DS+ L+F+ L R+T + K + +R
Sbjct: 251 IGDLYYALDSLPCLLFIMCL-RDTFKQDKRKFKDPRR 286
>07_03_1783 +
29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 6 HINPFPXATSTKSRNQQIRRPPMI 77
H NP P +S + R +Q+RR P++
Sbjct: 14 HPNPSPLPSSMEPRLRQLRRVPLL 37
>07_03_1041 +
23468867-23469215,23469231-23469348,23470920-23471041,
23471074-23471532,23474675-23474949,23475179-23475315,
23475353-23475405,23475456-23475516,23475606-23475707,
23476380-23476488,23476568-23476693,23476986-23477037,
23477236-23477317,23477395-23477488,23478166-23478262,
23478605-23478698,23479458-23479530,23480198-23480371,
23480526-23480648,23481396-23481533,23482270-23482446
Length = 1004
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 125 KLQVLKPQEICSKSYFYHWWPP 60
++++LK + SKSYFY W P
Sbjct: 693 EVEILKSEAHWSKSYFYLWDEP 714
>01_01_1019 + 8057784-8058983
Length = 399
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -1
Query: 111 KASRDMFKELLLSLVAALFAGFGILCLLXW 22
+++R+M K +L + + +F F ++CL W
Sbjct: 350 RSTREMAKPILRANASEIFTSFVMVCLRYW 379
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,011,602
Number of Sequences: 37544
Number of extensions: 136946
Number of successful extensions: 333
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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