Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_M11
(339 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024833-1|AAK85505.1| 79|Caenorhabditis elegans Hypothetical ... 56 9e-09
Z82086-3|CAB04997.1| 325|Caenorhabditis elegans Hypothetical pr... 28 2.0
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 27 3.4
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 27 3.4
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 27 3.4
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 27 3.4
AF003740-6|AAK68240.1| 238|Caenorhabditis elegans Hypothetical ... 27 3.4
Z48621-12|CAA88545.2| 425|Caenorhabditis elegans Hypothetical p... 27 4.5
AL031621-4|CAA20931.1| 75|Caenorhabditis elegans Hypothetical ... 27 4.5
Z81500-4|CAB04097.1| 254|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z70718-9|CAA94678.2| 371|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z50756-4|CAA90639.1| 482|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z50741-5|CAA90612.1| 482|Caenorhabditis elegans Hypothetical pr... 26 6.0
U53337-4|AAA96186.2| 636|Caenorhabditis elegans Hypothetical pr... 26 6.0
AC025716-18|AAT81178.1| 998|Caenorhabditis elegans Hypothetical... 26 6.0
Z66561-7|CAB54206.2| 419|Caenorhabditis elegans Hypothetical pr... 26 7.9
AF304127-1|AAG50240.1| 419|Caenorhabditis elegans innexin protein. 26 7.9
>AC024833-1|AAK85505.1| 79|Caenorhabditis elegans Hypothetical
protein Y57E12AM.1 protein.
Length = 79
Score = 55.6 bits (128), Expect = 9e-09
Identities = 27/74 (36%), Positives = 42/74 (56%)
Frame = -1
Query: 243 LEIESMIRYTSPINPAVFPHXXXXXXXXXXXXTAWFFVYEVTSTKASRDMFKELLLSLVA 64
++I M RYT+P+N A P A F + +VTSTK +R++ KEL ++ +
Sbjct: 1 MDISKMNRYTAPVNFASLPLLTTFLCGVGLLLLATFTMIQVTSTKYNRNLLKELFIAATS 60
Query: 63 ALFAGFGILCLLXW 22
++F GFG + LL W
Sbjct: 61 SVFLGFGSVFLLLW 74
>Z82086-3|CAB04997.1| 325|Caenorhabditis elegans Hypothetical
protein ZK228.6 protein.
Length = 325
Score = 27.9 bits (59), Expect = 2.0
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -1
Query: 144 AWFFVYEVTSTKASRDMFKELLLSLVAALFAGFGILC 34
+W+ + V+ ++A+ + K+ ++L +F F +LC
Sbjct: 217 SWYLYHTVSQSQATNRLQKQFFVALCIQVFIPFALLC 253
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 206 IGDVYRIIDSISRLIFMAILERNTIENKTNKTRQ 307
+ D +I+ + R + ERNTIEN+ RQ
Sbjct: 1363 LADRQMVIERVERQLVHITEERNTIENRMTSQRQ 1396
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 206 IGDVYRIIDSISRLIFMAILERNTIENKTNKTRQ 307
+ D +I+ + R + ERNTIEN+ RQ
Sbjct: 1363 LADRQMVIERVERQLVHITEERNTIENRMTSQRQ 1396
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 206 IGDVYRIIDSISRLIFMAILERNTIENKTNKTRQ 307
+ D +I+ + R + ERNTIEN+ RQ
Sbjct: 1123 LADRQMVIERVERQLVHITEERNTIENRMTSQRQ 1156
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 206 IGDVYRIIDSISRLIFMAILERNTIENKTNKTRQ 307
+ D +I+ + R + ERNTIEN+ RQ
Sbjct: 1363 LADRQMVIERVERQLVHITEERNTIENRMTSQRQ 1396
>AF003740-6|AAK68240.1| 238|Caenorhabditis elegans Hypothetical
protein C41D11.5 protein.
Length = 238
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 185 CGKTAGFIGDVYRIIDSISRLIFMAILERNTIENKTNKTRQTQR 316
CG T + D R I+R +FM + N+TNKT + R
Sbjct: 133 CGDTCAELNDFER--RKINRDLFMHSCSKEQQSNETNKTNKNHR 174
>Z48621-12|CAA88545.2| 425|Caenorhabditis elegans Hypothetical
protein R07B1.8 protein.
Length = 425
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 3 SHINPFPXATSTKSRNQQIRRPPMIK 80
+HI+P +TS +++ +PPM+K
Sbjct: 75 THISPPQESTSNDGETRKVTQPPMVK 100
>AL031621-4|CAA20931.1| 75|Caenorhabditis elegans Hypothetical
protein F28H6.7 protein.
Length = 75
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -2
Query: 155 YSSRPGSSFTKLQVLKPQEICSKSYFYHWWPPYLLVSGFCAC 30
Y+++P + + Q +E Y W P L+ FCAC
Sbjct: 15 YTAQPDINDSAFQAFGQRERQRSEIPYFWCIPCCLIIDFCAC 56
>Z81500-4|CAB04097.1| 254|Caenorhabditis elegans Hypothetical
protein F11D11.5 protein.
Length = 254
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 148 EEYSYSEQQKG*MWKNCRVYWRRVP 222
E YS+ + G ++KNC W R P
Sbjct: 94 EIYSWKKTDNGWIYKNCNDGWTRYP 118
>Z70718-9|CAA94678.2| 371|Caenorhabditis elegans Hypothetical
protein C04G2.9 protein.
Length = 371
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 223 PVHVANKPGSFSTSNLFVARNRNILHGLVLRLRSYKY 113
PVHV N G S + VA + IL + +R Y Y
Sbjct: 302 PVHVNNHKGDISVGVVNVAGGKQILAKVDVRNEKYGY 338
>Z50756-4|CAA90639.1| 482|Caenorhabditis elegans Hypothetical
protein T08D10.1 protein.
Length = 482
Score = 26.2 bits (55), Expect = 6.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 9 INPFPXATSTKSRNQQIRRPPMIK 80
+NP P ATS+ + Q +PP+++
Sbjct: 64 VNPSPPATSSPNVQTQCHQPPVVR 87
>Z50741-5|CAA90612.1| 482|Caenorhabditis elegans Hypothetical
protein T08D10.1 protein.
Length = 482
Score = 26.2 bits (55), Expect = 6.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 9 INPFPXATSTKSRNQQIRRPPMIK 80
+NP P ATS+ + Q +PP+++
Sbjct: 64 VNPSPPATSSPNVQTQCHQPPVVR 87
>U53337-4|AAA96186.2| 636|Caenorhabditis elegans Hypothetical
protein R02E12.2a protein.
Length = 636
Score = 26.2 bits (55), Expect = 6.0
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +2
Query: 14 SLPHXNKHKIPKPANKAATNDKSNSLNISLEALVLVTS*TKNQAVKNIPIPSNK 175
SLP+ K +P+ A +N+LN+ E ++ V S NQA N P+ +K
Sbjct: 6 SLPNNVLLKKARPSKIFAVTS-ANALNVKTEPVIFVKSDDLNQA--NTPLTGSK 56
>AC025716-18|AAT81178.1| 998|Caenorhabditis elegans Hypothetical
protein Y39G10AR.3 protein.
Length = 998
Score = 26.2 bits (55), Expect = 6.0
Identities = 22/54 (40%), Positives = 26/54 (48%)
Frame = +2
Query: 155 IPIPSNKKVRCGKTAGFIGDVYRIIDSISRLIFMAILERNTIENKTNKTRQTQR 316
IP+PSNKK+ GK AG D ++ LI M NK NK TQR
Sbjct: 631 IPMPSNKKIVYGK-AG--KDATMLLSDDGSLIAMG-------SNKHNKLNLTQR 674
>Z66561-7|CAB54206.2| 419|Caenorhabditis elegans Hypothetical
protein F08G12.10 protein.
Length = 419
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 106 LKRYVQRVTFIIGGRLICWFRDFVLVAMGKGLMCE 2
L++ ++ F R+ WF FVLVAM + C+
Sbjct: 16 LRKQQGQLAFDTIDRVNAWFTPFVLVAMTLAISCK 50
>AF304127-1|AAG50240.1| 419|Caenorhabditis elegans innexin protein.
Length = 419
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 106 LKRYVQRVTFIIGGRLICWFRDFVLVAMGKGLMCE 2
L++ ++ F R+ WF FVLVAM + C+
Sbjct: 16 LRKQQGQLAFDTIDRVNAWFTPFVLVAMTLAISCK 50
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,101,147
Number of Sequences: 27780
Number of extensions: 128201
Number of successful extensions: 415
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -