Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_M08
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    34   0.009
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    27   1.4  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   1.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   1.8  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   3.2  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   4.3  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    25   4.3  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   5.6  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    24   7.4  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    24   9.8  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           24   9.8  

>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 33.9 bits (74), Expect = 0.009
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -2

Query: 242 NQDVARSPAEVPNDPGKMFVGGLSWQTSPGKSSKDISEE 126
           N+D A   +    + GKMF+GGL+W+T+   S +D  E+
Sbjct: 148 NEDNAEETSPFNREDGKMFIGGLNWETT-DDSLRDYFEQ 185


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = -2

Query: 341 ATPGAVPAAY-RSIVVVVP--TGSHRVPAPSPMETQNQDVARSPAEVPNDPG 195
           A P   P +Y  S     P  + S   PAP+P  +QN+    +P   P   G
Sbjct: 57  APPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPPQGG 108


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 21   GLIFILLALVNFVRETSTPQRLSHVAA 101
            G+ FIL+A+ +F ++T+    + H+AA
Sbjct: 2005 GISFILVAITHFFQKTTACSVIQHIAA 2031


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
 Frame = -2

Query: 323  PAAYRSIVVVVPTGSHRV---PAPSPMETQNQDVARSPAEVPNDPGKMFVGGLSWQTSPG 153
            PA   ++  V P     V   PAPS        V++ P  VPN P    +  ++ Q    
Sbjct: 1449 PAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSS 1508

Query: 152  KSSKDISEEQRKAARSLCGHVTEP 81
             +           ++S   HV  P
Sbjct: 1509 VAPATAPSSTLPPSQSSFAHVPSP 1532


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 68   INPTAAQSRGRKETALLSFAPQRCLSTIY 154
            I+P AA S     T  L+F P+ CL   Y
Sbjct: 955  IHPAAAMSFSDGSTTNLAFEPRDCLQLYY 983


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = -2

Query: 347 SRATPGAVPAAYRSIVVVVPTGSHRVPAPSPMETQ-NQDVARSPAE---VPNDPGKMFVG 180
           S A    V A+  ++ + +P   HR+     ++ +  + +A  P E   +    GK+ + 
Sbjct: 2   SAAAVKGVQASLDNLSLEIPFIQHRLDLFDKLQKEYKESLATKPREEIDITLPDGKV-IK 60

Query: 179 GLSWQTSPGKSSKDISE 129
           G SW+T+P   +  IS+
Sbjct: 61  GTSWETTPISIAASISK 77


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 175 SAGRLVQVNRRKTSLRSKGKQRGLFAAT 92
           S  RL+ V+  KTS   K K+ GL +AT
Sbjct: 383 SNDRLILVDDEKTSWIYKNKESGLISAT 410


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -2

Query: 290 PTGSHRVPA--PSPMETQNQDVARSPAEVPN-DPGKMFVGGLSWQTSPGKSSKDISEEQR 120
           PT   R P+  PSPM ++ + VAR+    P+    K F G  S ++      K+  E + 
Sbjct: 199 PTCEKRKPSRSPSPMLSKKKSVARASENEPSAKQNKSFSGNDSHKSLTDIRDKENGETEV 258

Query: 119 KA 114
            A
Sbjct: 259 SA 260


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +1

Query: 127 SSEMSFDDLPGLVCQLS--PPTNIF 195
           SSE+  D++  LVC LS   P+N+F
Sbjct: 505 SSEVIIDEVISLVCDLSWIYPSNVF 529


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 348 QPSDSGSRPRRVSLDRSRSADRL 280
           QP  S SRPR  ++   R+ +RL
Sbjct: 285 QPQSSRSRPRSSTIPTQRTLERL 307


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 58  SEKHQPHSGSVTWPQRDRAAFLCSS 132
           S+  QPHS  + WP+     F+  S
Sbjct: 15  SKAFQPHSTRLQWPKSQDKVFVAMS 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,481,235
Number of Sequences: 5004
Number of extensions: 27022
Number of successful extensions: 88
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)