Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_M08
(396 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 36 0.008
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 36 0.008
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 32 0.13
U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical pr... 31 0.23
Z47808-12|CAB61003.1| 902|Caenorhabditis elegans Hypothetical p... 29 1.6
Z47808-11|CAD36487.1| 928|Caenorhabditis elegans Hypothetical p... 29 1.6
Z35595-13|CAA84639.2| 902|Caenorhabditis elegans Hypothetical p... 29 1.6
Z35595-12|CAD36478.1| 928|Caenorhabditis elegans Hypothetical p... 29 1.6
Z35595-11|CAJ34992.1| 769|Caenorhabditis elegans Hypothetical p... 29 1.6
AJ132947-1|CAC29085.1| 902|Caenorhabditis elegans receptor tyro... 29 1.6
AJ132946-1|CAC29084.1| 928|Caenorhabditis elegans receptor tyro... 29 1.6
Z81521-4|CAB04229.1| 367|Caenorhabditis elegans Hypothetical pr... 27 3.7
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 27 3.7
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 27 3.7
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 27 3.7
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 27 3.7
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 27 3.7
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 27 3.7
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 27 3.7
Z82270-1|CAB63203.1| 914|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 27 6.4
U28971-1|AAA68376.2| 551|Caenorhabditis elegans Egg sterile (un... 27 6.4
DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related ... 27 6.4
DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related ... 27 6.4
AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeti... 27 6.4
AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeti... 27 6.4
Z81077-9|CAD56582.1| 565|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z81077-8|CAB03072.2| 528|Caenorhabditis elegans Hypothetical pr... 26 8.5
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 26 8.5
AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ... 26 8.5
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ... 26 8.5
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 26 8.5
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 26 8.5
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 36.3 bits (80), Expect = 0.008
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -2
Query: 203 DPGKMFVGGLSWQTS 159
DPGKMF+GGLSWQT+
Sbjct: 43 DPGKMFIGGLSWQTT 57
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 36.3 bits (80), Expect = 0.008
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -2
Query: 203 DPGKMFVGGLSWQTS 159
DPGKMF+GGLSWQT+
Sbjct: 43 DPGKMFIGGLSWQTT 57
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
F46C3.3 protein.
Length = 2557
Score = 32.3 bits (70), Expect = 0.13
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Frame = -2
Query: 383 PADESRAGSR*CSRATPGAVPAAY---RSIVVVVPTGSHRVPAPSPMETQNQDVARSPAE 213
P +SRA R + +P AY VV P S+R P+P+P + + R P E
Sbjct: 1572 PRGDSRARERMENPLLARQIPRAYPYQNGNVVPPPPSSYRAPSPAPTSGDRRGLNRLPQE 1631
Query: 212 VPNDPGKMFVGGLSWQTSPGKSSKD 138
+P S SP + + D
Sbjct: 1632 SYTEPAVKNTKNNSEYLSPHRFNLD 1656
>U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical
protein B0507.3 protein.
Length = 432
Score = 31.5 bits (68), Expect = 0.23
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Frame = -2
Query: 266 APSPMETQNQD--VARSPAEVPN-DPGKMFVGGLSWQTSPGKSSKDISEEQR-KAARSL 102
AP PME Q+Q+ + +SPA P+ D V L+ +S+K +EQ+ KAA S+
Sbjct: 164 APVPMEIQSQEQPIKKSPAPTPSLDASNKPVAALASTPQQKESTKKTEKEQKEKAAPSV 222
>Z47808-12|CAB61003.1| 902|Caenorhabditis elegans Hypothetical
protein C01G6.8b protein.
Length = 902
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 332 GAVPAAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPND 201
G VP + + ++P+ H P P PM+ Q R P++ P D
Sbjct: 508 GRVPP-HVEMTSLLPSAQHLGPPPYPMDQHLQQARRFPSQEPID 550
>Z47808-11|CAD36487.1| 928|Caenorhabditis elegans Hypothetical
protein C01G6.8a protein.
Length = 928
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 332 GAVPAAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPND 201
G VP + + ++P+ H P P PM+ Q R P++ P D
Sbjct: 534 GRVPP-HVEMTSLLPSAQHLGPPPYPMDQHLQQARRFPSQEPID 576
>Z35595-13|CAA84639.2| 902|Caenorhabditis elegans Hypothetical
protein C01G6.8b protein.
Length = 902
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 332 GAVPAAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPND 201
G VP + + ++P+ H P P PM+ Q R P++ P D
Sbjct: 508 GRVPP-HVEMTSLLPSAQHLGPPPYPMDQHLQQARRFPSQEPID 550
>Z35595-12|CAD36478.1| 928|Caenorhabditis elegans Hypothetical
protein C01G6.8a protein.
Length = 928
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 332 GAVPAAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPND 201
G VP + + ++P+ H P P PM+ Q R P++ P D
Sbjct: 534 GRVPP-HVEMTSLLPSAQHLGPPPYPMDQHLQQARRFPSQEPID 576
>Z35595-11|CAJ34992.1| 769|Caenorhabditis elegans Hypothetical
protein C01G6.8c protein.
Length = 769
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 332 GAVPAAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPND 201
G VP + + ++P+ H P P PM+ Q R P++ P D
Sbjct: 375 GRVPP-HVEMTSLLPSAQHLGPPPYPMDQHLQQARRFPSQEPID 417
>AJ132947-1|CAC29085.1| 902|Caenorhabditis elegans receptor
tyrosine kinase protein.
Length = 902
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 332 GAVPAAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPND 201
G VP + + ++P+ H P P PM+ Q R P++ P D
Sbjct: 508 GRVPP-HVEMTSLLPSAQHLGPPPYPMDQHLQQARRFPSQEPID 550
>AJ132946-1|CAC29084.1| 928|Caenorhabditis elegans receptor
tyrosine kinase protein.
Length = 928
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 332 GAVPAAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPND 201
G VP + + ++P+ H P P PM+ Q R P++ P D
Sbjct: 534 GRVPP-HVEMTSLLPSAQHLGPPPYPMDQHLQQARRFPSQEPID 576
>Z81521-4|CAB04229.1| 367|Caenorhabditis elegans Hypothetical
protein F32A11.6 protein.
Length = 367
Score = 27.5 bits (58), Expect = 3.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 185 VGGLSWQTSPGKSSKDISEEQRKAARSLCGHVTEP 81
+GGL Q+SP KSS D S + A+ C T P
Sbjct: 247 MGGLEMQSSPMKSSSDSSHMRSPMAQMNC-ETTRP 280
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -2
Query: 299 VVVPTGSHRV---PAPSPMETQNQDVARSPAEVPNDPGKMFVGGLSWQ 165
VVVP V +P + DV+ SP+E D KMFVG + Q
Sbjct: 18 VVVPIAESTVINAKDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQ 65
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -2
Query: 299 VVVPTGSHRV---PAPSPMETQNQDVARSPAEVPNDPGKMFVGGLSWQ 165
VVVP V +P + DV+ SP+E D KMFVG + Q
Sbjct: 18 VVVPIAESTVINAKDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQ 65
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -2
Query: 299 VVVPTGSHRV---PAPSPMETQNQDVARSPAEVPNDPGKMFVGGLSWQ 165
VVVP V +P + DV+ SP+E D KMFVG + Q
Sbjct: 18 VVVPIAESTVINAKDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQ 65
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -2
Query: 299 VVVPTGSHRV---PAPSPMETQNQDVARSPAEVPNDPGKMFVGGLSWQ 165
VVVP V +P + DV+ SP+E D KMFVG + Q
Sbjct: 18 VVVPIAESTVINAKDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQ 65
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -2
Query: 299 VVVPTGSHRV---PAPSPMETQNQDVARSPAEVPNDPGKMFVGGLSWQ 165
VVVP V +P + DV+ SP+E D KMFVG + Q
Sbjct: 18 VVVPIAESTVINAKDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQ 65
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -2
Query: 299 VVVPTGSHRV---PAPSPMETQNQDVARSPAEVPNDPGKMFVGGLSWQ 165
VVVP V +P + DV+ SP+E D KMFVG + Q
Sbjct: 18 VVVPIAESTVINAKDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQ 65
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -2
Query: 299 VVVPTGSHRV---PAPSPMETQNQDVARSPAEVPNDPGKMFVGGLSWQ 165
VVVP V +P + DV+ SP+E D KMFVG + Q
Sbjct: 18 VVVPIAESTVINAKDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQ 65
>Z82270-1|CAB63203.1| 914|Caenorhabditis elegans Hypothetical
protein F53H2.1 protein.
Length = 914
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 311 DTRRGRLPESLGCTTDYRHETH 376
D +G ES+GC TD RH T+
Sbjct: 542 DFLQGSSLESIGCLTDTRHSTN 563
>Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical
protein F28C1.1 protein.
Length = 672
Score = 26.6 bits (56), Expect = 6.4
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -1
Query: 342 SDSGSRPRRVSLDRSRSADRLAPR 271
S S S PRR S RSR+ DR PR
Sbjct: 407 SRSRSPPRRRSRSRSRTRDRRRPR 430
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
protein C46C2.1b protein.
Length = 1677
Score = 26.6 bits (56), Expect = 6.4
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -2
Query: 308 SIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPNDP 198
S V VPT VP PS + QN +P N P
Sbjct: 816 SAAVPVPTTMIHVPKPSEIPVQNVATTAAPVAANNVP 852
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
protein C46C2.1a protein.
Length = 1838
Score = 26.6 bits (56), Expect = 6.4
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -2
Query: 308 SIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPNDP 198
S V VPT VP PS + QN +P N P
Sbjct: 816 SAAVPVPTTMIHVPKPSEIPVQNVATTAAPVAANNVP 852
>U28971-1|AAA68376.2| 551|Caenorhabditis elegans Egg sterile
(unfertilizable) protein1 protein.
Length = 551
Score = 26.6 bits (56), Expect = 6.4
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +1
Query: 127 SSEMSFDDLPGLVCQLSPPTNIFPGSLGTSAGLRATSWFWVSMGLGAGTRCE 282
+ ++ FDDL G+ P T++FP ++ T +G V M + + RC+
Sbjct: 99 TDKIRFDDLNGI-----PMTSLFPQNVSTCSGFGFACTGAVHMVIPSSKRCD 145
>DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related
alternative variant b protein.
Length = 482
Score = 26.6 bits (56), Expect = 6.4
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -2
Query: 347 SRATPGAVP--AAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPA 216
S+ TP P A RS ++ + VPAP+P + Q A PA
Sbjct: 321 SKLTPKIRPIATANRSSILRMNVVKPTVPAPAPADAQQNKAASRPA 366
>DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related
alternative variant a protein.
Length = 507
Score = 26.6 bits (56), Expect = 6.4
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -2
Query: 347 SRATPGAVP--AAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPA 216
S+ TP P A RS ++ + VPAP+P + Q A PA
Sbjct: 321 SKLTPKIRPIATANRSSILRMNVVKPTVPAPAPADAQQNKAASRPA 366
>AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform b
protein.
Length = 482
Score = 26.6 bits (56), Expect = 6.4
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -2
Query: 347 SRATPGAVP--AAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPA 216
S+ TP P A RS ++ + VPAP+P + Q A PA
Sbjct: 321 SKLTPKIRPIATANRSSILRMNVVKPTVPAPAPADAQQNKAASRPA 366
>AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform a
protein.
Length = 507
Score = 26.6 bits (56), Expect = 6.4
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -2
Query: 347 SRATPGAVP--AAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPA 216
S+ TP P A RS ++ + VPAP+P + Q A PA
Sbjct: 321 SKLTPKIRPIATANRSSILRMNVVKPTVPAPAPADAQQNKAASRPA 366
>Z81077-9|CAD56582.1| 565|Caenorhabditis elegans Hypothetical
protein F36A2.9b protein.
Length = 565
Score = 26.2 bits (55), Expect = 8.5
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 1/99 (1%)
Frame = +1
Query: 52 ILSEKHQPHSGSVTWPQRDRAAFLCSSEMSFDDLPGL-VCQLSPPTNIFPGSLGTSAGLR 228
I EKHQP +G + DR F C + + L G V +SP ++G + L
Sbjct: 106 IKPEKHQPVAGVINSAFNDRKTFSC-PRIKTELLTGTNVGNISPEDITIIAAMGDA--LA 162
Query: 229 ATSWFWVSMGLGAGTRCEPVGTTTTIERYAAGTAPGVAR 345
W + + P+G +TI+ T P + R
Sbjct: 163 TGIGLWPNADIEFRGASFPIGGDSTIDGLI--TIPNILR 199
>Z81077-8|CAB03072.2| 528|Caenorhabditis elegans Hypothetical
protein F36A2.9a protein.
Length = 528
Score = 26.2 bits (55), Expect = 8.5
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 1/99 (1%)
Frame = +1
Query: 52 ILSEKHQPHSGSVTWPQRDRAAFLCSSEMSFDDLPGL-VCQLSPPTNIFPGSLGTSAGLR 228
I EKHQP +G + DR F C + + L G V +SP ++G + L
Sbjct: 106 IKPEKHQPVAGVINSAFNDRKTFSC-PRIKTELLTGTNVGNISPEDITIIAAMGDA--LA 162
Query: 229 ATSWFWVSMGLGAGTRCEPVGTTTTIERYAAGTAPGVAR 345
W + + P+G +TI+ T P + R
Sbjct: 163 TGIGLWPNADIEFRGASFPIGGDSTIDGLI--TIPNILR 199
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 108 PRCFPLLLRDVFRRFTWTSLPAESSD 185
P F L VFR+ +W L E+ D
Sbjct: 585 PNLFSACLEHVFRKLSWIELKGEAED 610
>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
protein Y38E10A.6b protein.
Length = 1345
Score = 26.2 bits (55), Expect = 8.5
Identities = 20/62 (32%), Positives = 24/62 (38%)
Frame = -2
Query: 344 RATPGAVPAAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPNDPGKMFVGGLSWQ 165
RAT PAA + GSH + +PS Q P E P + K V L
Sbjct: 1192 RATTTNPPAAPVA-TAFTKIGSHIIISPSQKHKSTQTTDFGPKEAPKEAPKAVVETLEPD 1250
Query: 164 TS 159
TS
Sbjct: 1251 TS 1252
>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
protein Y38E10A.6a protein.
Length = 1343
Score = 26.2 bits (55), Expect = 8.5
Identities = 20/62 (32%), Positives = 24/62 (38%)
Frame = -2
Query: 344 RATPGAVPAAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPNDPGKMFVGGLSWQ 165
RAT PAA + GSH + +PS Q P E P + K V L
Sbjct: 1190 RATTTNPPAAPVA-TAFTKIGSHIIISPSQKHKSTQTTDFGPKEAPKEAPKAVVETLEPD 1248
Query: 164 TS 159
TS
Sbjct: 1249 TS 1250
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 108 PRCFPLLLRDVFRRFTWTSLPAESSD 185
P F L VFR+ +W L E+ D
Sbjct: 756 PNLFSACLEHVFRKLSWIELKGEAED 781
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 108 PRCFPLLLRDVFRRFTWTSLPAESSD 185
P F L VFR+ +W L E+ D
Sbjct: 495 PNLFSACLEHVFRKLSWIELKGEAED 520
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,492,502
Number of Sequences: 27780
Number of extensions: 166756
Number of successful extensions: 596
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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