Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_L22
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93381-1|CAB07604.1|  509|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z83119-4|CAE17866.1|  226|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z93381-1|CAB07604.1|  509|Caenorhabditis elegans Hypothetical
           protein F28G4.1 protein.
          Length = 509

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 513 NGITTKIRIYLYLNKKKGTYSI-*FGLLFLVN 421
           N I  ++RIY Y+ K  G YS    G L++VN
Sbjct: 24  NFIRDRLRIYKYMRKFDGPYSFPIIGTLYMVN 55


>Z83119-4|CAE17866.1|  226|Caenorhabditis elegans Hypothetical
           protein R05H10.7 protein.
          Length = 226

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 74  IDMLHFLHKHLQKFTFQNINRKLKRNITLVSEFYCNMLVTTLKLQSANL 220
           I ML+  H+       QNIN  L R ++ VSE Y    + T K+ + N+
Sbjct: 105 IKMLNTCHEDFWNLAPQNINVVLHREVSSVSEKYQRRGIAT-KMLTTNM 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,336,668
Number of Sequences: 27780
Number of extensions: 264160
Number of successful extensions: 495
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)