Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_L18
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...   109   5e-25
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    29   0.65 
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    29   0.86 
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    27   2.0  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    27   2.0  
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac...    27   2.6  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.0  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score =  109 bits (261), Expect = 5e-25
 Identities = 55/133 (41%), Positives = 84/133 (63%), Gaps = 3/133 (2%)
 Frame = -2

Query: 698 IPYFWEKFDPENYSIWYAEYKYPEELAK-VFMSCNLITGMFQRLDKMRKQAFASVCLFGE 522
           +P+F+E FDPENYS+W  +Y YPE+L + VFM+ NLI G FQRL+  RK  F    + GE
Sbjct: 282 LPWFFEHFDPENYSVWKVDYSYPEDLKQPVFMTNNLIGGFFQRLEASRKYIFGCCVVIGE 341

Query: 521 DNNSTISGVWVWRGKELV--FPLSSDWQVDYESYDWKKLDPSSEETKKLVQDYFSWNGTD 348
           + ++TI+G +V +G + V  F ++ DW     SY + KLD +  E K  ++D ++W+   
Sbjct: 342 NGDNTITGAFVIKGHDYVPAFDVAPDW----GSYTFTKLDINKPEDKAFIEDAWAWD-KP 396

Query: 347 KDGRKFNQGKIFK 309
            +GR+   GK+ K
Sbjct: 397 IEGREVADGKVCK 409


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 688 SGRSLTPRTIPFGMPNTNTLRNSLRCS*AVTLLRVCSRG*TKCANRLSHPSAC 530
           SGR +  R + +  PN   L+   R    VTL  VC RG +  +NR+     C
Sbjct: 163 SGRKIQ-RPVAYN-PNATALKRKSRKVDMVTLCSVCQRGHSPLSNRIVFCDGC 213


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -3

Query: 379  SRTTSRGTEPTKTVESSTRARYSSECRQTSS 287
            S TTS  T  + T+ SSTR+  +SE   TSS
Sbjct: 987  SSTTSGLTSSSSTIPSSTRSESNSESASTSS 1017


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 446 QVDYESYDWKKLD 408
           QVDY SYDWK+ D
Sbjct: 298 QVDYLSYDWKETD 310


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -3

Query: 478 RSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSRGTEPTKTVESSTR 323
           R S S  R+I    T P   R++    ++ +N   T     EP +TVE  TR
Sbjct: 531 RKSSSILRMISHSNTDPVELRSYNQSLQQNKNNEPTAVVPLEPEQTVELETR 582


>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
           Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +1

Query: 487 HTHTPEMVELLSS---PNRQTDAKACLRILSNLWNIPVIRL 600
           + H P  V+ L+    PN   +   CL IL   WN PV+ L
Sbjct: 80  YPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWN-PVLNL 119


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 220 IYI*MFLFCKVFYSYCMKCVYIGWTFVGIHLNILPWLNFLPSLSVPFHEK 369
           +YI M  +  +FY Y      +G   +GI + IL  L   P + V +  +
Sbjct: 355 LYICMVGYPLIFYQYGFNAGEVGLAILGILVGILLGLALTPIIYVHYRRR 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,092,209
Number of Sequences: 5004
Number of extensions: 67885
Number of successful extensions: 203
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)