Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_L16
(721 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin pr... 66 3e-11
AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin ... 66 3e-11
Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 36 0.022
U88165-5|AAK21392.1| 393|Caenorhabditis elegans Downstream of m... 29 3.3
U34893-1|AAB01720.1| 393|Caenorhabditis elegans DOM-3 protein. 29 3.3
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ... 29 4.4
AB006659-1|BAA21847.1| 655|Caenorhabditis elegans E6-AP ubiquit... 29 4.4
Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical pr... 28 7.7
AL132898-8|CAB60959.1| 297|Caenorhabditis elegans Hypothetical ... 28 7.7
AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome r... 28 7.7
>X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin
protein.
Length = 395
Score = 65.7 bits (153), Expect = 3e-11
Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Frame = -1
Query: 721 IDNPEYTXDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAK-ERGEVIKKRQ-- 551
I+NPEYT D LY + A+G DLWQVKSGTIFD+ +ITD A+ E K +
Sbjct: 289 IENPEYTPDDELYSYESWGAIGFDLWQVKSGTIFDNIIITDSVEEAEAHAAETFDKLKTV 348
Query: 550 EGEKKMKSEQ 521
E EKK K+++
Sbjct: 349 EKEKKEKADE 358
>AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin
protein 1 protein.
Length = 395
Score = 65.7 bits (153), Expect = 3e-11
Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Frame = -1
Query: 721 IDNPEYTXDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAK-ERGEVIKKRQ-- 551
I+NPEYT D LY + A+G DLWQVKSGTIFD+ +ITD A+ E K +
Sbjct: 289 IENPEYTPDDELYSYESWGAIGFDLWQVKSGTIFDNIIITDSVEEAEAHAAETFDKLKTV 348
Query: 550 EGEKKMKSEQ 521
E EKK K+++
Sbjct: 349 EKEKKEKADE 358
>Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical
protein ZK632.6 protein.
Length = 619
Score = 36.3 bits (80), Expect = 0.022
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = -1
Query: 721 IDNPEYTXDSNLYKRDEICAVGLDLWQVKSGTIFDDFLIT---DDPAAAKERGEVIKKRQ 551
IDNP Y I AVG+++W + +FD+ LIT +D + ++ +K+++
Sbjct: 394 IDNPNYFEPKPFAGLAPITAVGIEMWTMSENILFDNILITSSEEDSSDVAKQTFYVKQKE 453
Query: 550 E 548
E
Sbjct: 454 E 454
>U88165-5|AAK21392.1| 393|Caenorhabditis elegans Downstream of mes
(in same operon)protein 3 protein.
Length = 393
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +1
Query: 91 HVPAHGARPITKH*IITYIN---SERNPHLHGHQYETTDTYLLTHNMSLRIGKIRAKHTH 261
H+P +P+ I + N RNP Q + Y + ++ L++G++RAK H
Sbjct: 28 HIPKITGQPLPNEVQIPFDNMIYETRNPPKFEKQAKFISEYCINYDRKLQLGRMRAKKFH 87
>U34893-1|AAB01720.1| 393|Caenorhabditis elegans DOM-3 protein.
Length = 393
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +1
Query: 91 HVPAHGARPITKH*IITYIN---SERNPHLHGHQYETTDTYLLTHNMSLRIGKIRAKHTH 261
H+P +P+ I + N RNP Q + Y + ++ L++G++RAK H
Sbjct: 28 HIPKITGQPLPNEVQIPFDNMIYETRNPPKFEKQAKFISEYCINYDRKLQLGRMRAKKFH 87
>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
protein Y39A1C.2 protein.
Length = 1066
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +2
Query: 233 SVKFEPNTRTVLKTNDNSIGIVEDCA-MRGFKRRILHARTLRTPRYSM---SWHSLIIHN 400
+V P+ RT+ TN+N I V A R F+R + T S+ +W SL N
Sbjct: 857 TVDLVPSGRTISVTNENKIDYVHRMAHHRVFRRTQEQCKAFVTGMQSILQPTWLSLFAPN 916
Query: 401 SLQLIV 418
LQ ++
Sbjct: 917 DLQCLI 922
>AB006659-1|BAA21847.1| 655|Caenorhabditis elegans E6-AP
ubiquitin-protein ligase protein.
Length = 655
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +2
Query: 233 SVKFEPNTRTVLKTNDNSIGIVEDCA-MRGFKRRILHARTLRTPRYSM---SWHSLIIHN 400
+V P+ RT+ TN+N I V A R F+R + T S+ +W SL N
Sbjct: 445 TVDLVPSGRTISVTNENKIDYVHRMAHHRVFRRTQEQCKAFVTGMQSILQPTWLSLFAPN 504
Query: 401 SLQLIV 418
LQ ++
Sbjct: 505 DLQCLI 510
>Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical
protein R07E5.1 protein.
Length = 812
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 631 GTIFDDFLITDDPAAAKERGEVIKKRQEGEKKMK 530
G D+ D+ A KER E++KKR+E K+ +
Sbjct: 654 GADSDESNSEDEEAEEKERQEILKKREEDLKRRR 687
>AL132898-8|CAB60959.1| 297|Caenorhabditis elegans Hypothetical
protein Y59A8B.11 protein.
Length = 297
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = -2
Query: 375 DIEYLGVRSVRAWRILLLKPLIAQSSTIPILLSFVFSTVRVFGSNF 238
D YL V R +LLK + +S I F VRVF NF
Sbjct: 221 DTAYLSVADAVKIRDILLKSTVFESGIITSRNIFSVGVVRVFNPNF 266
>AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 8 protein.
Length = 362
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -1
Query: 721 IDNPEYTXDSNLYKRDEICAV---GLDLWQVKSGTIFDDFLITDDPAAAKERGEVIKKRQ 551
+ +P+Y N+ D++ V L V + D+ + +E GE KK+
Sbjct: 273 VTHPDYIVSQNVQTNDQLMCVYMGSLVRSVVALHNLIDNKISLQKAEKEQETGEAEKKKD 332
Query: 550 EGEKKMKSEQ 521
E +KK K ++
Sbjct: 333 EKDKKDKKDE 342
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,703,542
Number of Sequences: 27780
Number of extensions: 267036
Number of successful extensions: 820
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -