Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_L15
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 117 2e-27
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 29 0.74
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 28 0.98
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 28 0.98
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac... 26 4.0
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 25 9.1
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 25 9.1
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 25 9.1
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 9.1
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 117 bits (281), Expect = 2e-27
Identities = 62/128 (48%), Positives = 85/128 (66%)
Frame = -2
Query: 487 EDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPV 308
+DPL FLR PQFQQ+R ++QQNP +L +LQQIGQ +PAL Q I+Q+ EAF+++L E
Sbjct: 244 DDPLGFLRSIPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAITQNPEAFLQLLAEGA 303
Query: 307 NPSAAGVASDENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKN 128
+A P G Q IQ++ ++ E+I+RL LGF ++VIQAY AC+KN
Sbjct: 304 EGESA------------LPSGGIQ--IQITQEESESIDRLCQLGFDRNIVIQAYLACDKN 349
Query: 127 ENLAANFL 104
E LAAN+L
Sbjct: 350 EELAANYL 357
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 28.7 bits (61), Expect = 0.74
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 61 IRXSQALSHQNSXPAKS*LQDSHFFHKQNRLVSPY 165
IR ALS+QN P + L + HK +VSP+
Sbjct: 643 IRSRSALSYQNDRPLATDLPSVIYNHKHPNVVSPF 677
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 28.3 bits (60), Expect = 0.98
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 280 DENVADIQQPQLGSQNVIQV-SAQDKEAIERLKALGFPEHMVIQAYFACEK 131
D ++ + P+ +V++ SA + A RLK LG + ++ CEK
Sbjct: 442 DNTLSSVDIPRASIAHVVRATSAMSQSASARLKNLGLQQKAILCTLVVCEK 492
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 28.3 bits (60), Expect = 0.98
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -2
Query: 439 RAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPV 308
R V Q++ LN ++ Q T P ++ I ++E + N P+
Sbjct: 624 RTVAQRHKEQLNQLMNQFNSTQPHFIRCIVPNEEKKMHTFNRPL 667
>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 4.0
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Frame = -2
Query: 322 LNEPVNPSAAGVASDENVADI---QQPQLGSQNVIQVS-AQDKEAIERLKALGFPEHMVI 155
L + V P+A+ + +DE +D+ ++ GS N + + + R + G P + +
Sbjct: 18 LTQEVRPTASQIIADEEASDLDEYEEDLEGSGNEDDFGPSMSRSSRGRKRRKGDP--LEL 75
Query: 154 QAYFACEKNENLAANF-LLAQN 92
Q+ F E+NE A NF LL +N
Sbjct: 76 QSQFE-ERNETDAINFQLLVRN 96
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 172 PEHMVIQAYFACEKNENLAANFLLAQN 92
PE + + F C EN +F+LAQ+
Sbjct: 22 PEREIYEFLFTCNLTENDVFSFILAQD 48
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = -2
Query: 316 EPVNPSAAGVASDENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYF 143
+P + + G + V I+ + S N +++S+Q + L PE V YF
Sbjct: 642 KPSHSDSKGFSRGVGVVGIKPKNIKSSNTVKLSSQQLKKESVLLNCTIPEFNVSNTYF 699
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -2
Query: 211 DKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLAQNFDD*VLD 71
++ AIE+L+A+GFP +A A ++ A L ++ +D +D
Sbjct: 578 NQSAIEQLQAMGFPLVRCQRALLATGNSDTETAMNWLFEHMEDPEID 624
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.0 bits (52), Expect = 9.1
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Frame = +1
Query: 133 FHKQNRLVSPYVQENQELLIFXXXXXXXXXXXXHSVTLIEV-----VEYQQ-HSHLMLLP 294
F K+ R S + E++++ + HSV ++ VE++ + + LL
Sbjct: 1428 FLKRFRRSSSTIYEHRQIWLDIMIKYLEDLRLQHSVKETQINDLPLVEFKYVYKEISLLD 1487
Query: 295 QQKGSLVHLTF*QRLLDVG*LLVIKLD 375
+QK SL+H + R L+ G IK+D
Sbjct: 1488 EQKLSLLHQVYEIRKLNNGLYPTIKVD 1514
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,049,688
Number of Sequences: 5004
Number of extensions: 33737
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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