Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_L09
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    27   3.0  
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    26   4.0  
SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces...    26   4.0  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   4.0  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    26   5.3  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    26   5.3  
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    25   7.0  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    25   7.0  
SPBC3B8.08 |||Sjogren's syndrome/scleroderma autoantigen 1 famil...    25   9.3  

>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -1

Query: 571 DXYRMSPFNQSMHRDRYRMSPFNQFRDVVEPQFYRPWENTLR-QIENVMKPIEQLAS 404
           D   + P N+    +  +   F  F D+V PQ  RPW    R  I    KP ++ A+
Sbjct: 81  DKEGLGPVNEVEEAEMLKWMCFINF-DIVTPQNVRPWVGMFRGNIPYEEKPFKESAT 136


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 565 YRMSPFNQSMHRDRYRMSPFNQFRDVVEPQFYRPWENTLRQIEN 434
           YR+S  N    +  Y          + +P F R W+NT  +I+N
Sbjct: 8   YRLSSKNLLSFKTCYSFYSTKASSPLPQPSFRRFWKNTATKIQN 51


>SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 214 FIRRYALPQGCLPDTVESKLSSDGVLTVTAPKV 116
           F R   +P     D +E+  S+ G+LTVT PKV
Sbjct: 100 FSRTITIPAKIDADRIEANFSN-GLLTVTLPKV 131


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -1

Query: 127  APKVLALPSTGEKIVPITHTGPVMKK---VGSQEPAAGTV 17
            AP + A P+T +   P+T T   +K+   V + +PA  TV
Sbjct: 1028 APAMQARPNTTQAAAPVTSTTTTIKQATTVSASKPAPSTV 1067


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 553 PFNQSMHRDRYRMSPFNQFRDVVEPQFYRPWENTL 449
           PF+ S+  DRY++SP++  R+  +P  Y    N L
Sbjct: 280 PFS-SLPLDRYQISPYSCLRNTGDPWEYMSRSNGL 313


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 111 ASTLGAVTVRTPSEDNFDSTVSGKQPCGSAYRLMN 215
           A+ +GA+ +   S +N  S + GK+ C S  R+M+
Sbjct: 700 ATPIGAIRIHLRSANNLHSKIPGKK-CDSYARIMS 733


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 441 ICRKVFSQGL*NCGSTT 491
           +C ++F+ G  NCGSTT
Sbjct: 2   LCFQLFAMGCPNCGSTT 18


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 511 ETFCSGHDASIG*KATSCXNPAGRRVLDPSDEMVS 615
           E  C G +  +  K T+  N     +LDP+D  V+
Sbjct: 240 EIICQGREFQVQHKLTNKGNKTFEDILDPADNTVA 274


>SPBC3B8.08 |||Sjogren's syndrome/scleroderma autoantigen 1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 153

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -1

Query: 184 CLPDTVESKLSSDGVLTVTAPKVLALP---STGEKIVPITHTGPVMKKVGSQEPAAGTV 17
           C+ D  ES  S    +  +APK+ +LP   +   +    T   PVM++  S   A  +V
Sbjct: 47  CINDLKESDASEHVTVAESAPKIASLPISKTNDAERSQQTTKAPVMERTESSHQATLSV 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,795
Number of Sequences: 5004
Number of extensions: 49493
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)