Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_L01
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    26   2.8  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   4.9  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    25   4.9  

>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 142 VNTSILLFNFRLL-DFFYHFSR 204
           VNT++L  N  LL +F+Y F R
Sbjct: 824 VNTAVLFINIELLSEFYYQFPR 845


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 392 YLISCMRSEAMSKSGEGNTKTVYLKEQ 312
           YL+SC  SE ++ S + N ++ +L  Q
Sbjct: 297 YLLSCYESEILNLSSDTNLESDFLLRQ 323


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 387 NFVHAIRGYE*IRRGEYE 334
           NFVHAIRG+E    G+ +
Sbjct: 121 NFVHAIRGFEATVEGQVD 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,441,094
Number of Sequences: 5004
Number of extensions: 23336
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)