Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_L01
         (427 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1178 + 35149700-35150238,35151064-35151385,35151787-35152038     30   0.68 
05_03_0373 - 13194723-13195847,13196219-13196809                       30   0.90 
01_01_1096 - 8659091-8659459,8660730-8661050,8661416-8661694,866...    30   0.90 
01_01_0225 - 1911820-1912929,1913345-1913893,1914010-1914024           30   0.90 
06_02_0106 - 11898493-11901471                                         27   6.3  

>01_06_1178 + 35149700-35150238,35151064-35151385,35151787-35152038
          Length = 370

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -2

Query: 354 IRRGEYENGLFKGAKGAIIDRITYEVNGLISL 259
           +R  E+ NG FK A G I+  +T E N  ISL
Sbjct: 291 VRTQEWSNGEFKNAVGEILFELTDEPNPFISL 322


>05_03_0373 - 13194723-13195847,13196219-13196809
          Length = 571

 Score = 29.9 bits (64), Expect = 0.90
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -2

Query: 351 RRGEYENGLFKGAK-GAIIDRITYEVNGLISLVG 253
           RR + E+GL +    GA++ R+TY V G +S+ G
Sbjct: 69  RRADEEDGLRRAVPAGALVPRVTYRVVGWVSVQG 102


>01_01_1096 -
           8659091-8659459,8660730-8661050,8661416-8661694,
           8661781-8661897,8662142-8662210,8663204-8663397,
           8663552-8663633
          Length = 476

 Score = 29.9 bits (64), Expect = 0.90
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 236 SCEHHHPTSEIKPLTS*VIRSIIAPFAPLNRPFSYSPRLIYS*PRIAC 379
           +C++HHP     P +  ++ S+  P  P  +P +Y  +  Y    +AC
Sbjct: 327 TCKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVAC 374


>01_01_0225 - 1911820-1912929,1913345-1913893,1914010-1914024
          Length = 557

 Score = 29.9 bits (64), Expect = 0.90
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = -2

Query: 351 RRGEYENGLFKGAKGAIIDRITYEVNGLISL 259
           R GE E+GL +   GA+  R+TY V G ISL
Sbjct: 69  RAGE-EDGLRRAVAGALKPRVTYRVAGWISL 98


>06_02_0106 - 11898493-11901471
          Length = 992

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 48  IMRFTKLFM*VTSRFLCVHIMSNNLRFCYNL 140
           I  F+KL   + +  +C++   NNL +C+NL
Sbjct: 671 IRNFSKLETSLFTSAICMYSRFNNLEYCHNL 701


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,180,589
Number of Sequences: 37544
Number of extensions: 119189
Number of successful extensions: 231
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)