Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_K24
(444 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_02_0008 + 8473198-8475523,8475618-8475967 33 0.14
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400... 30 0.73
07_01_1123 - 10385215-10385574,10385676-10385810,10386385-103870... 30 0.73
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110... 29 1.3
07_01_1122 - 10359014-10359127,10359686-10359769,10360375-10361331 28 2.9
01_01_1198 - 9643469-9643585,9643740-9643805,9643905-9644489,964... 28 3.9
10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353... 27 6.8
06_01_0875 + 6707483-6709394,6709750-6709829,6710077-6710174,671... 27 9.0
01_06_1723 - 39443176-39443505,39443615-39443710,39443834-394439... 27 9.0
>04_02_0008 + 8473198-8475523,8475618-8475967
Length = 891
Score = 32.7 bits (71), Expect = 0.14
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -2
Query: 281 KENTVDLKGDSGVPQITEIFIGDGCPTGYG-RAQDNTCQLII 159
K N+V+LKG+ G+ +T IF CPT R ++NT L+I
Sbjct: 500 KPNSVNLKGNKGLCALTSIFALPICPTSPAKRKKNNTRWLLI 541
>12_02_1042 +
25638585-25638711,25639585-25639745,25639873-25640064,
25640221-25640315,25640645-25640807,25640905-25641015,
25641611-25642741,25642813-25642965,25643060-25643159,
25643333-25643427,25643508-25643681,25643751-25643807,
25643887-25643958,25644151-25644249,25644320-25644451,
25644549-25644722,25644830-25644957,25645065-25645119
Length = 1072
Score = 30.3 bits (65), Expect = 0.73
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 52 IRKRFRNKVSVKNLSRSFYSPNVHSGNIKSNLFG 153
I +R +N S N+S+SF+ P ++ NI+ ++FG
Sbjct: 566 ILERNKNSWSDLNISKSFHLPPLNDENIRKSIFG 599
>07_01_1123 -
10385215-10385574,10385676-10385810,10386385-10387091,
10387158-10387455
Length = 499
Score = 30.3 bits (65), Expect = 0.73
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 386 LLLINVSGIKCFNVTSPSIEGVIFNGTF 303
LLL N G +C + SP+I GV F+ +
Sbjct: 236 LLLRNSYGFRCLRINSPTIRGVAFHSPY 263
>02_04_0038 -
19110520-19110574,19110684-19110811,19110912-19111085,
19111189-19111320,19111391-19111489,19111680-19111751,
19111831-19111887,19111957-19112130,19112211-19112305,
19112478-19112577,19112672-19112824,19112896-19114026,
19114621-19114731,19114829-19114991,19115364-19115458,
19115613-19115804,19115929-19116069
Length = 1023
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 58 KRFRNKVSVKNLSRSFYSPNVHSGNIKSNLFG 153
+R +N S N+S+SF+ P ++ NI+ ++FG
Sbjct: 519 ERNKNSWSDLNISKSFHLPPLNDENIRKSIFG 550
>07_01_1122 - 10359014-10359127,10359686-10359769,10360375-10361331
Length = 384
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 386 LLLINVSGIKCFNVTSPSIEGVIFNGTF 303
LLL N G +C + SP+ GV F+ +
Sbjct: 220 LLLRNSYGFRCLRINSPTTRGVAFHSPY 247
>01_01_1198 -
9643469-9643585,9643740-9643805,9643905-9644489,
9645159-9645994,9646597-9646783,9647572-9647737,
9648431-9648520,9649122-9649184,9649277-9649413,
9649835-9650349,9651130-9651231,9651581-9651602
Length = 961
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -1
Query: 231 GDIHRRWLPNWLWQ-SAR*HLSADNRV 154
GD++RR L NW W+ ++ H SA + V
Sbjct: 842 GDVYRRHLENWTWRWTSHGHPSAPSAV 868
>10_01_0323 +
3530246-3530446,3531091-3531726,3531860-3532018,
3532276-3532569,3557747-3557941,3558875-3559095,
3559190-3559373,3559797-3559973,3561319-3561824,
3561880-3562060
Length = 917
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +1
Query: 307 VPLNITPSIDGEVTLKHFIPDTLISNSTVTHNAYCRNIS 423
+P + P I EV+ +H PDT + + N+S
Sbjct: 434 IPTDSAPIISDEVSAQHSAPDTAVEPPAIEAGGVIGNVS 472
>06_01_0875 +
6707483-6709394,6709750-6709829,6710077-6710174,
6710704-6710840,6710961-6711301,6711402-6711599
Length = 921
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 352 KHFIPDTLISNSTVTHNAYC 411
K F+PDT ISN+ +T + C
Sbjct: 395 KSFVPDTAISNALITMYSRC 414
>01_06_1723 -
39443176-39443505,39443615-39443710,39443834-39443902,
39444381-39444443,39444521-39444598,39444725-39444838,
39445727-39445804,39446457-39446522,39446739-39446804,
39446896-39447003,39447355-39447432,39447951-39448010,
39448087-39448191,39448407-39448595,39448922-39448985,
39449244-39449385,39449494-39449654,39449952-39450076,
39450230-39450300,39450410-39450560,39450713-39450769,
39451049-39451143,39451331-39451379
Length = 804
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 113 QTYILEI*SRIFLVTRLSADRCYLALCHNQ 202
QTYIL ++FL+ R S +RC AL N+
Sbjct: 414 QTYILSSSMQVFLIIRRSLNRC-SALTKNE 442
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,241,550
Number of Sequences: 37544
Number of extensions: 201808
Number of successful extensions: 515
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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