Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_K22
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0394 - 15340726-15341990,15342091-15342186,15342278-15342302     27   9.6  
04_03_0333 + 14569377-14569401,14569493-14569588,14569689-14570953     27   9.6  
04_03_0332 + 14535793-14535921,14536003-14537037                       27   9.6  
01_06_0081 + 26265402-26265539,26266044-26266134,26266797-26267077     27   9.6  

>04_03_0394 - 15340726-15341990,15342091-15342186,15342278-15342302
          Length = 461

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 480 DCFVVELGGCRYLPXQTYHLRS*RHDYIV 394
           DC  V LGGC+  P   +H     H Y V
Sbjct: 385 DCIFVGLGGCKSFPAGLHHGVEGDHIYFV 413


>04_03_0333 + 14569377-14569401,14569493-14569588,14569689-14570953
          Length = 461

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 480 DCFVVELGGCRYLPXQTYHLRS*RHDYIV 394
           DC  V LGGC+  P   +H     H Y V
Sbjct: 385 DCIFVGLGGCKSFPAGLHHGVEGDHIYFV 413


>04_03_0332 + 14535793-14535921,14536003-14537037
          Length = 387

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 480 DCFVVELGGCRYLPXQTYHLRS*RHDYIV 394
           DC  V LGGC+  P   +H     H Y V
Sbjct: 311 DCIFVGLGGCKSFPAGLHHGVEGDHIYFV 339


>01_06_0081 + 26265402-26265539,26266044-26266134,26266797-26267077
          Length = 169

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 440 GRYRHPPSSTTKQSCVPVAELRQPLYFTI 526
           G Y  PP +TT  SC+ + EL   + + +
Sbjct: 137 GSYTQPPIATTTISCLQITELSSSVEYKV 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,157,917
Number of Sequences: 37544
Number of extensions: 206328
Number of successful extensions: 340
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)