Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_K20
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    28   1.1  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    27   2.6  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    26   5.9  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   7.8  

>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 205 LSVLIVNKFNMLRNLHYF*WKTIFVIFFKEQT 110
           LS L VN+F  ++N+    W T   IFF E+T
Sbjct: 165 LSSLAVNEFRTIQNISKSIWYTRLGIFFIEET 196


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 301 KLCFYMYPQTHLDLFVLQGKKRYLF 375
           KLC Y+Y   HLD  V   K  YLF
Sbjct: 191 KLCIYLYEARHLDQ-VWDEKSTYLF 214


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 367 IAFYLEEQIGLNVFEDTYKNRVLFYSIMYKFS 272
           I F+L     + + E  Y+N+ +FYS++  F+
Sbjct: 453 IPFFLPSDKLIMLVESEYRNKHIFYSLLNSFT 484


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 16  NVIKKYTKMQLTGVIFKYLKLQSV 87
           N++K  TK+ L   +F  LKLQ +
Sbjct: 514 NIVKILTKLPLLSTVFVKLKLQGI 537


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,869
Number of Sequences: 5004
Number of extensions: 58457
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)