Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_K15
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY373340-1|AAQ76550.1| 1007|Caenorhabditis elegans BAM-2 protein.      29   4.1  
AC024853-1|AAO21419.1| 1007|Caenorhabditis elegans Branching abn...    29   4.1  
Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina...    28   7.2  
AF016433-10|AAB65387.1|  338|Caenorhabditis elegans Seven tm rec...    28   7.2  

>AY373340-1|AAQ76550.1| 1007|Caenorhabditis elegans BAM-2 protein.
          Length = 1007

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = +3

Query: 558 ELRTKLSGKIRRLDILVERSLARIFAVEVLS*G-----GGTEHEKRR 683
           E+   +   + RL  L   SLA ++A+  +S G     GGT HEK+R
Sbjct: 470 EIHLAVDSSVCRLQQLSNISLAEVYAIPQISGGAGLFIGGTWHEKKR 516


>AC024853-1|AAO21419.1| 1007|Caenorhabditis elegans Branching
           abnormal protein 2 protein.
          Length = 1007

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = +3

Query: 558 ELRTKLSGKIRRLDILVERSLARIFAVEVLS*G-----GGTEHEKRR 683
           E+   +   + RL  L   SLA ++A+  +S G     GGT HEK+R
Sbjct: 470 EIHLAVDSSVCRLQQLSNISLAEVYAIPQISGGAGLFIGGTWHEKKR 516


>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical
           protein K03H1.2 protein.
          Length = 1131

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -3

Query: 667 SVPPPHEXTSTANIRASDRSTKISNLLIFPLNFVRSSNNVLD*IYRLHTINK-DNTFSVQ 491
           S  P  + T+ AN+    +S  + +LL F        +N+L+ +Y+L T+   DNT  + 
Sbjct: 791 STVPEIQRTNLANVVLLLKSLGVDDLLKFHFMDAPPQDNMLNSMYQLWTLGALDNTGQLT 850

Query: 490 KANRRYQNF 464
              R+   F
Sbjct: 851 PMGRKMVEF 859


>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex
           determination protein MOG-1 protein.
          Length = 1131

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -3

Query: 667 SVPPPHEXTSTANIRASDRSTKISNLLIFPLNFVRSSNNVLD*IYRLHTINK-DNTFSVQ 491
           S  P  + T+ AN+    +S  + +LL F        +N+L+ +Y+L T+   DNT  + 
Sbjct: 791 STVPEIQRTNLANVVLLLKSLGVDDLLKFHFMDAPPQDNMLNSMYQLWTLGALDNTGQLT 850

Query: 490 KANRRYQNF 464
              R+   F
Sbjct: 851 PMGRKMVEF 859


>AF016433-10|AAB65387.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 130 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = -1

Query: 687 RPAASHAQYHHLTRXLPPQIYALVIALLRYLTF*FFHLTSYGALIMFWIESI--DYIQLI 514
           R  AS  +Y  +   +   IYA++ A +  LT    HL  +G+ I+F++ S+  D+I   
Sbjct: 32  RAGASFGRYRIMM--ITFSIYAIIYATIEILTLPVMHL--HGSGILFYVNSVLKDHISAG 87

Query: 513 KIILSVF 493
            II +++
Sbjct: 88  VIISTMY 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,185,384
Number of Sequences: 27780
Number of extensions: 198934
Number of successful extensions: 301
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)