Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_K12
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   4.5  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.9  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   7.9  

>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 120 KQMKQSYRTNGLTTECQED--KHNPNMDSRKKKTNINMKNSWNIEIIKYFVYDNFI 281
           KQ+++  +   L T  ++   KH PN  + +   N NM N  N E +      NF+
Sbjct: 410 KQLEKCVKLVSLDTANEKHFLKHTPNSAAHQSLLNTNMFNDANFEFMVKEHIKNFL 465


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +3

Query: 168  QEDKHNPNMDSRKKKTNINMKNSWNIEIIKYFVYDN 275
            ++ KH  + D  K K+  N++ S  +++ ++F+ +N
Sbjct: 1195 KKHKHFYHRDDGKYKSGTNLRKSETVDLPQFFIDEN 1230


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 93  YEXLYFHRQKQMKQSYRTNGLTTECQEDKHNPNMDSRKKKTNINMKNSWNI 245
           +E L  H Q++ + +YR        +ED       SRKK+  ++ KN  N+
Sbjct: 3   FENLGGHAQRRDESAYRLG------EEDGRQKGESSRKKRPPLSRKNPSNV 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,806
Number of Sequences: 5004
Number of extensions: 41982
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)