Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_K12
(703 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC032378-1|AAH32378.1| 194|Homo sapiens mitochondrial ribosomal... 95 2e-19
BC012489-1|AAH12489.1| 193|Homo sapiens mitochondrial ribosomal... 95 2e-19
AK223152-1|BAD96872.1| 194|Homo sapiens mitochondrial ribosomal... 95 2e-19
AK222933-1|BAD96653.1| 194|Homo sapiens mitochondrial ribosomal... 95 2e-19
AK026165-1|BAB15381.1| 194|Homo sapiens protein ( Homo sapiens ... 95 2e-19
AF320777-1|AAK97314.1| 193|Homo sapiens cervical cancer proto-o... 95 2e-19
AB049944-1|BAB40997.1| 194|Homo sapiens mitochondrial ribosomal... 95 2e-19
BC009451-1|AAH09451.1| 160|Homo sapiens Unknown (protein for IM... 79 2e-14
X99720-1|CAA68060.1| 491|Homo sapiens TPRC protein. 39 0.020
X97124-1|CAA65791.1| 491|Homo sapiens prcc protein. 39 0.020
BC010450-1|AAH10450.1| 491|Homo sapiens papillary renal cell ca... 39 0.020
BC004913-1|AAH04913.1| 491|Homo sapiens papillary renal cell ca... 39 0.020
AL590666-17|CAI16351.1| 256|Homo sapiens papillary renal cell c... 39 0.020
AL590666-16|CAI16350.1| 491|Homo sapiens papillary renal cell c... 39 0.020
>BC032378-1|AAH32378.1| 194|Homo sapiens mitochondrial ribosomal
protein S11 protein.
Length = 194
Score = 95.1 bits (226), Expect = 2e-19
Identities = 45/108 (41%), Positives = 62/108 (57%)
Frame = -3
Query: 677 GIPYKDLPICNIRVSHXNTIFTLTEPDGKVRIIRSCGMEGFKNTKKGXXXXXXXXXXXXX 498
G ++++PI +I+ SH NT + + SCG EGF+N KKG
Sbjct: 77 GKKFEEIPIAHIKASHNNTQIQVVSASNEPLAFASCGTEGFRNAKKGTGIAAQTAGIAAA 136
Query: 497 TKAVVQGYNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWN 354
+A +G +RV V+GLGPGRLSA+ GL MGGL ++SITDNT + N
Sbjct: 137 ARAKQKGVIHIRVVVKGLGPGRLSAMHGLIMGGLEVISITDNTPIPHN 184
>BC012489-1|AAH12489.1| 193|Homo sapiens mitochondrial ribosomal
protein S11 protein.
Length = 193
Score = 95.1 bits (226), Expect = 2e-19
Identities = 45/108 (41%), Positives = 62/108 (57%)
Frame = -3
Query: 677 GIPYKDLPICNIRVSHXNTIFTLTEPDGKVRIIRSCGMEGFKNTKKGXXXXXXXXXXXXX 498
G ++++PI +I+ SH NT + + SCG EGF+N KKG
Sbjct: 76 GKKFEEIPIAHIKASHNNTQIQVVSASNEPLAFASCGTEGFRNAKKGTGIAAQTAGIAAA 135
Query: 497 TKAVVQGYNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWN 354
+A +G +RV V+GLGPGRLSA+ GL MGGL ++SITDNT + N
Sbjct: 136 ARAKQKGVIHIRVVVKGLGPGRLSAMHGLIMGGLEVISITDNTPIPHN 183
>AK223152-1|BAD96872.1| 194|Homo sapiens mitochondrial ribosomal
protein S11 isoform a variant protein.
Length = 194
Score = 95.1 bits (226), Expect = 2e-19
Identities = 45/108 (41%), Positives = 62/108 (57%)
Frame = -3
Query: 677 GIPYKDLPICNIRVSHXNTIFTLTEPDGKVRIIRSCGMEGFKNTKKGXXXXXXXXXXXXX 498
G ++++PI +I+ SH NT + + SCG EGF+N KKG
Sbjct: 77 GKKFEEIPIAHIKASHNNTQIQVVSASNEPLAFASCGTEGFRNAKKGTGIAAQTAGIAAA 136
Query: 497 TKAVVQGYNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWN 354
+A +G +RV V+GLGPGRLSA+ GL MGGL ++SITDNT + N
Sbjct: 137 ARAKQKGVIHIRVVVKGLGPGRLSAMHGLIMGGLEVISITDNTPIPHN 184
>AK222933-1|BAD96653.1| 194|Homo sapiens mitochondrial ribosomal
protein S11 isoform a variant protein.
Length = 194
Score = 95.1 bits (226), Expect = 2e-19
Identities = 45/108 (41%), Positives = 62/108 (57%)
Frame = -3
Query: 677 GIPYKDLPICNIRVSHXNTIFTLTEPDGKVRIIRSCGMEGFKNTKKGXXXXXXXXXXXXX 498
G ++++PI +I+ SH NT + + SCG EGF+N KKG
Sbjct: 77 GKKFEEIPIAHIKASHNNTQIQVVSASNEPLAFASCGTEGFRNAKKGTGIAAQTAGIAAA 136
Query: 497 TKAVVQGYNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWN 354
+A +G +RV V+GLGPGRLSA+ GL MGGL ++SITDNT + N
Sbjct: 137 ARAKQKGVIHIRVVVKGLGPGRLSAMHGLIMGGLEVISITDNTPIPHN 184
>AK026165-1|BAB15381.1| 194|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22512 fis, clone HRC11839. ).
Length = 194
Score = 95.1 bits (226), Expect = 2e-19
Identities = 45/108 (41%), Positives = 62/108 (57%)
Frame = -3
Query: 677 GIPYKDLPICNIRVSHXNTIFTLTEPDGKVRIIRSCGMEGFKNTKKGXXXXXXXXXXXXX 498
G ++++PI +I+ SH NT + + SCG EGF+N KKG
Sbjct: 77 GKKFEEIPIAHIKASHNNTQIQVVSASNEPLAFASCGTEGFRNAKKGTGIAAQTAGIAAA 136
Query: 497 TKAVVQGYNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWN 354
+A +G +RV V+GLGPGRLSA+ GL MGGL ++SITDNT + N
Sbjct: 137 ARAKQKGVIHIRVVVKGLGPGRLSAMHGLIMGGLEVISITDNTPIPHN 184
>AF320777-1|AAK97314.1| 193|Homo sapiens cervical cancer
proto-oncogene 2 protein.
Length = 193
Score = 95.1 bits (226), Expect = 2e-19
Identities = 45/108 (41%), Positives = 62/108 (57%)
Frame = -3
Query: 677 GIPYKDLPICNIRVSHXNTIFTLTEPDGKVRIIRSCGMEGFKNTKKGXXXXXXXXXXXXX 498
G ++++PI +I+ SH NT + + SCG EGF+N KKG
Sbjct: 76 GKKFEEIPIAHIKASHNNTQIQVVSASNEPLAFASCGTEGFRNAKKGTGIAAQTAGIAAA 135
Query: 497 TKAVVQGYNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWN 354
+A +G +RV V+GLGPGRLSA+ GL MGGL ++SITDNT + N
Sbjct: 136 ARAKQKGVIHIRVVVKGLGPGRLSAMHGLIMGGLEVISITDNTPIPHN 183
>AB049944-1|BAB40997.1| 194|Homo sapiens mitochondrial ribosomal
protein S11 protein.
Length = 194
Score = 95.1 bits (226), Expect = 2e-19
Identities = 45/108 (41%), Positives = 62/108 (57%)
Frame = -3
Query: 677 GIPYKDLPICNIRVSHXNTIFTLTEPDGKVRIIRSCGMEGFKNTKKGXXXXXXXXXXXXX 498
G ++++PI +I+ SH NT + + SCG EGF+N KKG
Sbjct: 77 GKKFEEIPIAHIKASHNNTQIQVVSASNEPLAFASCGTEGFRNAKKGTGIAAQTAGIAAA 136
Query: 497 TKAVVQGYNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWN 354
+A +G +RV V+GLGPGRLSA+ GL MGGL ++SITDNT + N
Sbjct: 137 ARAKQKGVIHIRVVVKGLGPGRLSAMHGLIMGGLEVISITDNTPIPHN 184
>BC009451-1|AAH09451.1| 160|Homo sapiens Unknown (protein for
IMAGE:3531918) protein.
Length = 160
Score = 78.6 bits (185), Expect = 2e-14
Identities = 37/74 (50%), Positives = 46/74 (62%)
Frame = -3
Query: 575 SCGMEGFKNTKKGXXXXXXXXXXXXXTKAVVQGYNTVRVRVQGLGPGRLSAVKGLQMGGL 396
SCG EGF+N KKG +A +G +RV V+GLGPGRLSA+ GL MGGL
Sbjct: 77 SCGTEGFRNAKKGTGIAAQTAGIAAAARAKQKGVIHIRVVVKGLGPGRLSAMHGLIMGGL 136
Query: 395 NIVSITDNTHVSWN 354
++SITDNT + N
Sbjct: 137 EVISITDNTPIPHN 150
>X99720-1|CAA68060.1| 491|Homo sapiens TPRC protein.
Length = 491
Score = 38.7 bits (86), Expect = 0.020
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +2
Query: 104 LFPQAKANEAELQNQWANNRMSRRQTQS 187
L QAK E EL+N W+ N++SRRQTQ+
Sbjct: 460 LIHQAKERELELKNTWSENKLSRRQTQA 487
>X97124-1|CAA65791.1| 491|Homo sapiens prcc protein.
Length = 491
Score = 38.7 bits (86), Expect = 0.020
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +2
Query: 104 LFPQAKANEAELQNQWANNRMSRRQTQS 187
L QAK E EL+N W+ N++SRRQTQ+
Sbjct: 460 LIHQAKERELELKNTWSENKLSRRQTQA 487
>BC010450-1|AAH10450.1| 491|Homo sapiens papillary renal cell
carcinoma (translocation-associated) protein.
Length = 491
Score = 38.7 bits (86), Expect = 0.020
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +2
Query: 104 LFPQAKANEAELQNQWANNRMSRRQTQS 187
L QAK E EL+N W+ N++SRRQTQ+
Sbjct: 460 LIHQAKERELELKNTWSENKLSRRQTQA 487
>BC004913-1|AAH04913.1| 491|Homo sapiens papillary renal cell
carcinoma (translocation-associated) protein.
Length = 491
Score = 38.7 bits (86), Expect = 0.020
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +2
Query: 104 LFPQAKANEAELQNQWANNRMSRRQTQS 187
L QAK E EL+N W+ N++SRRQTQ+
Sbjct: 460 LIHQAKERELELKNTWSENKLSRRQTQA 487
>AL590666-17|CAI16351.1| 256|Homo sapiens papillary renal cell
carcinoma (translocation-associated) protein.
Length = 256
Score = 38.7 bits (86), Expect = 0.020
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +2
Query: 104 LFPQAKANEAELQNQWANNRMSRRQTQS 187
L QAK E EL+N W+ N++SRRQTQ+
Sbjct: 225 LIHQAKERELELKNTWSENKLSRRQTQA 252
>AL590666-16|CAI16350.1| 491|Homo sapiens papillary renal cell
carcinoma (translocation-associated) protein.
Length = 491
Score = 38.7 bits (86), Expect = 0.020
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +2
Query: 104 LFPQAKANEAELQNQWANNRMSRRQTQS 187
L QAK E EL+N W+ N++SRRQTQ+
Sbjct: 460 LIHQAKERELELKNTWSENKLSRRQTQA 487
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,450,781
Number of Sequences: 237096
Number of extensions: 1622162
Number of successful extensions: 6764
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6764
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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