Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_K12
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75552-5|CAA99938.1|  208|Caenorhabditis elegans Hypothetical pr...    89   3e-18
U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily ass...    31   0.80 
AF022971-9|AAG23978.2|  345|Caenorhabditis elegans Serpentine re...    29   2.4  
Z73424-4|CAA97778.2|  954|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p...    27   9.8  

>Z75552-5|CAA99938.1|  208|Caenorhabditis elegans Hypothetical
           protein W04D2.5 protein.
          Length = 208

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 42/105 (40%), Positives = 65/105 (61%)
 Frame = -3

Query: 683 YNGIPYKDLPICNIRVSHXNTIFTLTEPDGKVRIIRSCGMEGFKNTKKGXXXXXXXXXXX 504
           ++G+ Y +LP+  IR S  NT+ T+ +   +V    SC +EGFKN +K            
Sbjct: 89  FDGVAYHELPLVYIRASKNNTLVTVMDNKNEVITSTSCRLEGFKNARKKTTIAGQTTGVA 148

Query: 503 XXTKAVVQGYNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNT 369
              + V +G  TVRV+V+GLGPGR++ VKGL + G+++VSI+D+T
Sbjct: 149 AGQRLVRRGIRTVRVQVKGLGPGRMTCVKGLTVAGVHVVSISDHT 193


>U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 292 protein.
          Length = 722

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +3

Query: 186 PNMDSRKKKTNINMKNSWNIEIIKYFVYDNFILF 287
           P +DS+  + N+  + S  +EI K+FV+D  IL+
Sbjct: 17  PTVDSKATRENMLRQPSVTVEIGKHFVFDGMILY 50


>AF022971-9|AAG23978.2|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein38 protein.
          Length = 345

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = -3

Query: 206 FSRIHIWIVFVFLTFCC*PIGSVALLHLLLPVEI---KXFIDIILRKHSLFNFA*CCLGL 36
           F+   I    ++ TFCC P  SV  L +LL V I     FIDI    H       C + L
Sbjct: 245 FNERTILQAILYFTFCCVPF-SVLYLTILLEVHIPGSTYFIDIFSENHPTA----CAVSL 299

Query: 35  XSFY 24
             FY
Sbjct: 300 FLFY 303


>Z73424-4|CAA97778.2|  954|Caenorhabditis elegans Hypothetical
           protein C44B9.1 protein.
          Length = 954

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 66  QAVFPQNYIYEXLYFHRQKQMKQSYRTNGLTTECQEDKHNPNMDSRK 206
           Q  F Q  I   L     ++ ++SY T+   TE Q + +NPN+  ++
Sbjct: 522 QNPFCQAAIRSRLQSSYSQKSERSYSTSSAATEIQNENYNPNLTKQE 568


>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
           protein C47E12.5b protein.
          Length = 1028

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 470 TVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWN 354
           T  V + GLG   +   K L +GG+  V+I D     W+
Sbjct: 40  TASVLISGLGSVGVEIAKNLILGGVRHVTIHDTKLAKWS 78


>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
           protein C47E12.5a protein.
          Length = 1113

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 470 TVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWN 354
           T  V + GLG   +   K L +GG+  V+I D     W+
Sbjct: 125 TASVLISGLGSVGVEIAKNLILGGVRHVTIHDTKLAKWS 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,385,030
Number of Sequences: 27780
Number of extensions: 238595
Number of successful extensions: 646
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)