Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_K11
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   1.6  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   2.8  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    24   8.5  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 139 LGLFGTLVKSTLPFSTIRVRMITAYDYC 56
           LG+FG L  S +   +IR    T+YD+C
Sbjct: 540 LGVFGFLADSKVFLESIRPFFGTSYDFC 567


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 417  AHYCILFVAQIYLETIVYNHHALKVFL*NHKQSQNLFLVRIT*NKL*N 274
            A+  I   AQ+ LET+  N + L  F  N   S++L  + I+ N L N
Sbjct: 867  ANLSISSTAQVLLETLYANGNRLSSFPKNEALSKSLRFLDISTNNLQN 914


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 299 ELHETNYETKFDYTFKCFITVFKLKV*NGMFVCLLRP 189
           E  +  +E K+     C+I +  + V N +F+ ++RP
Sbjct: 368 ESRKLGFEAKYSLLRTCYIALAAVTVSNCLFLGVVRP 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,596,644
Number of Sequences: 5004
Number of extensions: 27953
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)