Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_K10
(353 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312... 31 0.20
03_05_0979 - 29380899-29381063,29381157-29381210,29381451-293814... 27 3.2
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038... 27 4.2
03_06_0084 + 31536286-31536718,31536907-31536983,31537380-315374... 27 4.2
01_06_1127 - 34699119-34699360,34699446-34699689,34699773-346998... 27 5.6
01_05_0318 - 20826377-20826571,20826663-20826764,20826839-208269... 27 5.6
06_01_1160 - 9868340-9868360,9868639-9868986 26 9.8
01_05_0308 + 20710454-20710570,20710917-20710999,20711114-207112... 26 9.8
>03_05_0816 +
27928812-27930059,27931007-27931111,27931197-27931262,
27931337-27931501,27931671-27931745,27931829-27931983,
27932234-27932369,27932454-27932523,27932602-27932729,
27932838-27932894,27933326-27933511,27934031-27934123,
27934488-27934573,27934668-27934734,27934873-27934939,
27935016-27935152,27935618-27935709,27935849-27935915,
27936058-27936078
Length = 1006
Score = 31.5 bits (68), Expect = 0.20
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 31 FSLLVAVMLDVDQHPGWDGRPAHHHQAGEEDHLTSGNLXFLAECR*RSCSFVG 189
F++L+ ++LDV P W + AGE +G+ F EC R VG
Sbjct: 321 FAVLMTMLLDVQDEPAWHAAVSEEEDAGE-----TGSYVFAQECLDRLAIAVG 368
>03_05_0979 -
29380899-29381063,29381157-29381210,29381451-29381456,
29382167-29382280,29382379-29382422,29382540-29382615
Length = 152
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 16 IFLCSFSLLVAVMLDVDQHPGWDGRPAHHHQAGE 117
+ LCS SLL+ ++L P +G HHHQ E
Sbjct: 4 LLLCSSSLLL-LLLSSHGLPSTEGGELHHHQIKE 36
>07_03_0997 -
23203166-23203330,23203627-23203693,23203771-23203862,
23204820-23204956,23205050-23205116,23205212-23205278,
23205356-23205441,23206061-23206153,23206337-23206522,
23207316-23207372,23207455-23207582,23207662-23207731,
23207815-23207950,23208378-23208529,23208606-23208680,
23208765-23208929,23209063-23209128,23209229-23209333,
23209929-23210132,23210462-23211715
Length = 1123
Score = 27.1 bits (57), Expect = 4.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 31 FSLLVAVMLDVDQHPGWDGRPAHHHQAGE 117
F++L+ ++LDV+ P W AGE
Sbjct: 331 FAVLMQMLLDVEDDPAWHTAETEDEDAGE 359
>03_06_0084 +
31536286-31536718,31536907-31536983,31537380-31537428,
31537778-31538048,31540876-31541104,31541511-31541750
Length = 432
Score = 27.1 bits (57), Expect = 4.2
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 103 HQAGEEDHLTSGNL 144
HQ EEDHL +GNL
Sbjct: 352 HQGAEEDHLITGNL 365
>01_06_1127 - 34699119-34699360,34699446-34699689,34699773-34699844,
34700123-34700218,34700322-34700438,34700520-34700676,
34700770-34700867,34700940-34701098,34701169-34701339,
34701402-34701479,34701548-34701667,34701968-34702085,
34702216-34702346,34702452-34702528,34702858-34702969,
34703057-34703239,34703416-34703517,34703617-34703718,
34703817-34703912,34704481-34704558,34704652-34704744,
34704817-34704938,34705035-34705116,34705204-34705278,
34705385-34705645,34705730-34705854,34705956-34706031,
34706128-34706277,34706359-34706454,34706707-34706814,
34706956-34707056,34707727-34707814,34707894-34708006,
34708278-34708383,34709143-34709247,34709356-34709427,
34709931-34709971,34710067-34710175,34710252-34710317,
34710404-34710540,34710788-34710890,34711416-34711535,
34711707-34711820,34711923-34712008,34712088-34712170,
34713283-34713347,34713444-34713621,34713697-34713776,
34714926-34715049,34715140-34715245,34715399-34715561
Length = 1966
Score = 26.6 bits (56), Expect = 5.6
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -3
Query: 348 EFGRPMKSLVN*FSLSILHKKI*D-YTSKNNCTKTKCLELGIYF 220
+ G +K +VN +SL L I + SKNN T+ +C+++ YF
Sbjct: 1253 KMGELIKQMVNIYSLPKLLPYILEGLRSKNNRTRIECVDIIGYF 1296
>01_05_0318 -
20826377-20826571,20826663-20826764,20826839-20826973,
20827924-20828016,20828072-20828230,20828325-20828929,
20829098-20829119,20829339-20829393,20829426-20829466,
20830250-20830363
Length = 506
Score = 26.6 bits (56), Expect = 5.6
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -2
Query: 160 TP-PRXQGFQR*DDLPRQPDGGGLVCHPSLGVGQHQ 56
TP P G DD QPD G +C P+ G G Q
Sbjct: 48 TPVPSECGAGHGDDEQHQPDIGTHLCSPAAGFGDQQ 83
>06_01_1160 - 9868340-9868360,9868639-9868986
Length = 122
Score = 25.8 bits (54), Expect = 9.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 220 RANNQIFKNVAQQRNMSVICTPP 152
+A Q+ + A RNM VICT P
Sbjct: 84 QAGRQVGRRPASIRNMRVICTTP 106
>01_05_0308 +
20710454-20710570,20710917-20710999,20711114-20711264,
20711369-20711468,20711592-20711684,20711891-20711939,
20712024-20712121,20712300-20712406,20712498-20712671
Length = 323
Score = 25.8 bits (54), Expect = 9.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 89 LPSQPGCWSTSSXTATSKENEHKKICSL 6
LP +P TSS +EHKK+ S+
Sbjct: 251 LPQKPSLLKTSSVRVQMHTSEHKKLASV 278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,145,223
Number of Sequences: 37544
Number of extensions: 165504
Number of successful extensions: 325
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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