Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_K09
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|... 27 2.2
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 27 2.2
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 27 2.9
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 27 2.9
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 27 2.9
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 27 2.9
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 27 3.9
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 25 8.9
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 25 8.9
>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 362
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = -1
Query: 670 HQPVELEEHLKKLKQRWGNSVTSDHKRRSQLALVNSEISRYMD 542
H ++H+ + Q +G++++S+ +R+ L S +S+Y D
Sbjct: 39 HDKCPFKQHISENGQNFGSAISSNISQRNFKTLRASHLSQYRD 81
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 27.5 bits (58), Expect = 2.2
Identities = 21/131 (16%), Positives = 50/131 (38%)
Frame = -1
Query: 436 AVVKKNKIYTALTIIACNLTLPAMCNEDHRKIKTLANKHVAKIYVCTEEARKSIAKMGIY 257
A + NKI + + + + L +M +E+H+++ L H + + + +
Sbjct: 225 AEAEANKIVSQKGMESLEIMLNSMKSENHQRMAMLEENHARVMETAELQHQAELQDFASN 284
Query: 256 AQEMINITKKHMEGSLVEAAKFIDKVRQRILQRKDINACLKQLSREAVLLGYELDLSLTN 77
++ N + L A + + + ++ Q ++++L + SL
Sbjct: 285 IEQKANSLIMEYKNELQSAEEHFSHKIKELTSENELKISRLQEEKDSLLKKVQEGASLAM 344
Query: 76 ARRHNEQSCEK 44
R N+ EK
Sbjct: 345 QRVQNKHDLEK 355
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = -1
Query: 640 KKLKQRWGNSVTSDHKRRSQLALVNSEISRYMDTVIAPFLDTYHRNIQISYQQMTEKILK 461
K K++W V D QL+ + ++ R + LDT + NIQ+ +T+ I+K
Sbjct: 20 KNTKEKW--DVIMD--ACDQLSSTSGDVGRNSIKFLNKRLDTANANIQLLALTLTDAIVK 75
Query: 460 RIKDEI 443
K I
Sbjct: 76 NCKTSI 81
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 673 QHQPVELEEHLKKLKQRWGNSVTSDHKRRSQLALVNSEI 557
+HQ + LEE+ KK SV ++ + S + L NSEI
Sbjct: 115 RHQAMLLEENNKKATALANASVQNERQMPSSMTLDNSEI 153
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 27.1 bits (57), Expect = 2.9
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = -1
Query: 484 QMTEKI-LKRIKDEINAAVVKKNKIYTALTI-IACNLTLPAMCNEDHRKIKTLANKHVAK 311
Q E+I L+R K I + K L+I +C + CN DH +I L + +
Sbjct: 224 QAGERIYLERQKLSIKSQSRNSRKKSKLLSINSSCYSNIVRFCNSDHHEIGKLPTEVASV 283
Query: 310 IYVCTEEARKSIAKMGIYAQEMI 242
I E+ S + IY+ +I
Sbjct: 284 ISTLMEQGFWSFEAICIYSDNII 306
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +3
Query: 45 FSHDCSLWRRAFVRLRSSS*PNKTASLDNCLRHALMSFLCRMRCLTLSMNLAASTKLPSM 224
FSH+ S +++LR T + C + L + +CL L KLP++
Sbjct: 439 FSHEISTLIYLYIKLRKLD--KLTEYVSGCPTEISLPILRKYKCLDQMELLGTIRKLPNV 496
Query: 225 CFLV 236
C V
Sbjct: 497 CMEV 500
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 327 TSTLPRYMFARRKLESPLPKWEFTLKK*SI-SLRSTWREVW 208
T P+ + R +L +P+ KW F S+ S ++ W+ W
Sbjct: 432 TDLFPKELIWRSRLTNPVNKWYFERSVGSLKSSKTPWKLFW 472
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 262 IYAQEMINITKKHMEGSLVEAAKFIDKVRQRILQRKDI 149
I Q M + KK + G +VEA + ++ + + +R+D+
Sbjct: 975 IARQVMQRVVKKFIAGQVVEATELLEYLSFSLYRREDL 1012
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 25.4 bits (53), Expect = 8.9
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -1
Query: 301 CTEEARKSIAKMGIYAQEMINITKKHMEGSLV-EAAKFIDKVRQRILQRKDI 149
C E KS+ K+GI++ M NI + GSL+ +A QRI Q + I
Sbjct: 809 CRSET-KSVFKLGIFSNRMFNIA---VGGSLIGQALVVYASPFQRIFQTEAI 856
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,490
Number of Sequences: 5004
Number of extensions: 56587
Number of successful extensions: 179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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