Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_K09
(763 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036705-2|AAM98021.1| 237|Caenorhabditis elegans Hypothetical ... 38 0.008
AF036705-1|AAB95170.1| 249|Caenorhabditis elegans Hypothetical ... 38 0.008
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass... 32 0.51
Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF125964-9|AAD14749.2| 523|Caenorhabditis elegans Glutamate tra... 30 1.6
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ... 28 6.3
U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical pr... 28 8.3
AL110482-5|CAB60338.2| 704|Caenorhabditis elegans Hypothetical ... 28 8.3
>AF036705-2|AAM98021.1| 237|Caenorhabditis elegans Hypothetical
protein F37C4.4b protein.
Length = 237
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 239 IDHF--LSVNSHFGNGLSSFLRANIYLGNVLVRECFNLPMIFIAHSWKGQITSYNRQRRI 412
+DH+ + V + GNGLS F+ L +V + CF L + I H W T Y ++I
Sbjct: 145 LDHYSKMKVRTAIGNGLSGFM----LLASVALGVCFILTAVMICHYWNSNTTGYQPVQKI 200
>AF036705-1|AAB95170.1| 249|Caenorhabditis elegans Hypothetical
protein F37C4.4a protein.
Length = 249
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 239 IDHF--LSVNSHFGNGLSSFLRANIYLGNVLVRECFNLPMIFIAHSWKGQITSYNRQRRI 412
+DH+ + V + GNGLS F+ L +V + CF L + I H W T Y ++I
Sbjct: 157 LDHYSKMKVRTAIGNGLSGFM----LLASVALGVCFILTAVMICHYWNSNTTGYQPVQKI 212
>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
gene nameprotein 162 protein.
Length = 2643
Score = 31.9 bits (69), Expect = 0.51
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 338 NTREQARCQDICLHGGSSKVHCQNGNLRSRND 243
N+ + +C ICL+ G +K CQ NL+S D
Sbjct: 1626 NSCDGFKCNGICLNNGKNKATCQCTNLQSTTD 1657
>Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical
protein C09G5.8 protein.
Length = 1531
Score = 30.3 bits (65), Expect = 1.6
Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 3/132 (2%)
Frame = -1
Query: 454 KDEINAAVVKKNK-IYTALTIIACNLTLPAMCNEDHRKIKTLANKHVAKIYVCTEEARKS 278
+ EI A + + N+ + I N TLPA C + + T ++ V+ Y + +R
Sbjct: 139 RSEITARMFENNREAMFKMLKIRWN-TLPASCKYNQLRRDTSSSDRVSARYPIEKWSRPQ 197
Query: 277 IAKMGIYAQEMINITKKHMEGSLVEAAKFIDKVRQRILQRKDINACLKQLSR--EAVLLG 104
+ E +N +K ++ + F + R+ +L+RK N + + S+ + V
Sbjct: 198 LEDHFHNVVEELNKAQKKVKEQEKQITTFNSRFRRSMLERKSQNEKVVERSKYDDVVKEN 257
Query: 103 YELDLSLTNARR 68
LD+ L A++
Sbjct: 258 QILDMKLKAAKQ 269
>Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical
protein C09G5.8 protein.
Length = 1531
Score = 30.3 bits (65), Expect = 1.6
Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 3/132 (2%)
Frame = -1
Query: 454 KDEINAAVVKKNK-IYTALTIIACNLTLPAMCNEDHRKIKTLANKHVAKIYVCTEEARKS 278
+ EI A + + N+ + I N TLPA C + + T ++ V+ Y + +R
Sbjct: 139 RSEITARMFENNREAMFKMLKIRWN-TLPASCKYNQLRRDTSSSDRVSARYPIEKWSRPQ 197
Query: 277 IAKMGIYAQEMINITKKHMEGSLVEAAKFIDKVRQRILQRKDINACLKQLSR--EAVLLG 104
+ E +N +K ++ + F + R+ +L+RK N + + S+ + V
Sbjct: 198 LEDHFHNVVEELNKAQKKVKEQEKQITTFNSRFRRSMLERKSQNEKVVERSKYDDVVKEN 257
Query: 103 YELDLSLTNARR 68
LD+ L A++
Sbjct: 258 QILDMKLKAAKQ 269
>AF125964-9|AAD14749.2| 523|Caenorhabditis elegans Glutamate
transporter family protein7 protein.
Length = 523
Score = 30.3 bits (65), Expect = 1.6
Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Frame = +2
Query: 155 FSLQNALSNLVNEFGSLHQTSLHVLLSDIDHFLSVNSHFG------NGLSSFLRANIYLG 316
F L + NLV G + L +++ + F S+ S G +G SF+ YL
Sbjct: 32 FDLSDNARNLVGFPGEIFMQVLKLMVLPLI-FSSLISSLGQMDASRSGKMSFIAIAYYLT 90
Query: 317 NVLVRECFNLPMIFIAHSWKGQITSYNRQRRINLILLHHRSVYFIFDPL*DLFGHLLVRD 496
V++ C + M+F+ H + S+ R ++++ ++ + D + DL ++ ++
Sbjct: 91 TVIIASCIGVAMVFLFHPGDPDMRSH---RPEDVVIREDNNISAL-DSILDLIRNMFPQN 146
Query: 497 L-NVTMVRVQ 523
+ TM R Q
Sbjct: 147 IVEATMYRSQ 156
>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
potassium channelsprotein 2 protein.
Length = 1564
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/61 (19%), Positives = 25/61 (40%)
Frame = -1
Query: 427 KKNKIYTALTIIACNLTLPAMCNEDHRKIKTLANKHVAKIYVCTEEARKSIAKMGIYAQE 248
K ++ ++AC +P MC + ++ + K + C + +K K Q+
Sbjct: 1239 KNYHLHKTARMLACANNVPKMCKKCAENVQKMCKKCAKNVQKCAKNVQKMCKKCAKNVQK 1298
Query: 247 M 245
M
Sbjct: 1299 M 1299
>U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical protein
ZC53.4 protein.
Length = 1410
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = -1
Query: 271 KMGIYAQEMINITKKHMEGSLVEAAKFIDKVRQRILQRKDINACLKQLSREAVLLGYELD 92
K G+Y E ++ K+ + L KF DK+ + +RK I A + + R L Y+LD
Sbjct: 1077 KKGVYPYEYMDSFKRFDKTKLPNRDKFYDKLNNKKCKRKGI-ADVFENFRALSLRVYQLD 1135
>AL110482-5|CAB60338.2| 704|Caenorhabditis elegans Hypothetical
protein Y39G8B.5 protein.
Length = 704
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -1
Query: 154 DINACLKQLSREAVLLGYELDLSLTNARRHNEQSC--EKISVCST 26
D AC K+LSREA L E D+ L RR E +K ++ ST
Sbjct: 518 DFEACAKKLSREAEDLRLE-DMDLPGIRREIESYLFYDKATILST 561
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,492,909
Number of Sequences: 27780
Number of extensions: 331606
Number of successful extensions: 1045
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -