Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_J24
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...   102   6e-23
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    28   1.5  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    27   2.7  
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha...    27   3.6  

>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score =  102 bits (244), Expect = 6e-23
 Identities = 55/125 (44%), Positives = 74/125 (59%), Gaps = 9/125 (7%)
 Frame = -2

Query: 491 KIAGYLNLAADFTHNFTDGLAIGASFIAGQSIGYITTVTILLHEIPHEIGDFAILVQSGC 312
           K   YLNL  D  HNF DGLAI ++F    SIG  TT  +LLHEIP EIGD AIL+++G 
Sbjct: 294 KTVVYLNLLCDSFHNFMDGLAITSAFFTNTSIGISTTFAVLLHEIPAEIGDLAILLRNGY 353

Query: 311 SRKKAMLLQLLTAFGAISGTFIS--IYLRGSGEGLVSSL-------ILPFTAGGFIYIAT 159
           ++ + ++LQ++T    + G  ++  IY   S      S        +LPFTAGGF+YIA 
Sbjct: 354 TKSQVLVLQMITMVTGLLGAIVATYIYTASSSSSPYGSFLLQLEDKLLPFTAGGFLYIAY 413

Query: 158 VSVXP 144
           + V P
Sbjct: 414 LGVFP 418


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -1

Query: 330 FGPIWLFKKESYAITI--AYCFWSNFRDLYFNLLK 232
           F  I+L+   +Y + +   YCF  NFR  + N+LK
Sbjct: 188 FKHIFLYVAPAYFVYLLRVYCFTPNFRPQFLNILK 222


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 315 LFKKESYAITIAYCFWSNFRDLYFNLLKRFRG 220
           +FKK  Y     YC ++ F+ L+ N+LK  +G
Sbjct: 497 IFKKICYLWLFLYCPFTPFQILFSNILKMEKG 528


>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
           Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 75

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -2

Query: 482 GYLNLAADFTHNFTDGL---AIGASFIAGQSIGYITTV 378
           GY+NLA + T  + +G      G +FI G ++ Y++ +
Sbjct: 36  GYMNLALERTEEYVNGKKTNVYGDAFIRGNNVLYVSAL 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,649
Number of Sequences: 5004
Number of extensions: 49223
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)