Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_J24
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0952 - 22981116-22981268,22981930-22981974,22982052-229821...    59   3e-09
05_03_0473 - 14469110-14469232,14470246-14470452,14471034-14471441     31   0.92 
04_04_1544 - 34273909-34274220,34274340-34274769,34274933-342750...    31   1.2  
12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012     30   1.6  
05_03_0472 - 14464320-14464428,14464468-14464500,14464889-144655...    30   2.1  
02_02_0626 + 12352984-12353193,12353666-12353767                       29   2.8  
04_04_1021 + 30190403-30190450,30191245-30192924                       29   4.9  
07_03_0158 + 14552665-14554209                                         28   6.5  

>08_02_0952 -
           22981116-22981268,22981930-22981974,22982052-22982153,
           22983262-22983468,22984783-22985042,22985338-22985442,
           22986244-22986247,22986877-22986962,22987022-22987064
          Length = 334

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 34/68 (50%), Positives = 44/68 (64%)
 Frame = -2

Query: 347 IGDFAILVQSGCSRKKAMLLQLLTAFGAISGTFISIYLRGSGEGLVSSLILPFTAGGFIY 168
           +GDF ILV+SG +  KA+    L+A  A++GT +++ L G   G  SSLI  FTAGGFIY
Sbjct: 236 VGDFGILVRSGFTVTKALFFNFLSALVALAGTALALSL-GKDPG-HSSLIEGFTAGGFIY 293

Query: 167 IATVSVXP 144
           IA   V P
Sbjct: 294 IAVAGVLP 301


>05_03_0473 - 14469110-14469232,14470246-14470452,14471034-14471441
          Length = 245

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = -2

Query: 452 HNFTDGLAIGASFIA--GQSIGYITTVTILLHEIPHEI--GDFAILVQSGCSRKKAMLLQ 285
           H+F +G  +G SF    G S G + T+ I +H IP  +  G  A  V +  S+   +L  
Sbjct: 167 HSFGEGSGVGVSFAGSKGFSQGLLVTIAIAVHNIPEGLAQGKGAFFVVAYSSQFPILLAY 226

Query: 284 LL 279
           L+
Sbjct: 227 LV 228


>04_04_1544 -
           34273909-34274220,34274340-34274769,34274933-34275030,
           34275178-34275280,34275386-34275471,34275590-34275677,
           34275773-34275886,34275975-34276179,34276530-34276557
          Length = 487

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +1

Query: 268 PKAVSNCNSIAFFLEQPDWTKMAKSPISCGISCRRMVTVVIYPILWPAIKEAPIASPSVK 447
           P  V   N I F  E P W   A + +  GI  +  + +    + WP ++   +  P+ K
Sbjct: 272 PLGVLKANIIKFEPELPSWKSSAIADLGVGIENK--IAMHFDTVFWPNVEVLGMVGPTPK 329

Query: 448 LC 453
            C
Sbjct: 330 AC 331


>12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012
          Length = 296

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 289 NSIAFFLEQPDWTKMAKSPISC 354
           +S+  FL+ P+WT+M + P+ C
Sbjct: 4   SSLPIFLDPPNWTQMQQQPLQC 25


>05_03_0472 -
           14464320-14464428,14464468-14464500,14464889-14465572,
           14465657-14465754,14465855-14465983,14466657-14466659
          Length = 351

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/82 (21%), Positives = 33/82 (40%)
 Frame = -2

Query: 458 FTHNFTDGLAIGASFIAGQSIGYITTVTILLHEIPHEIGDFAILVQSGCSRKKAMLLQLL 279
           F H + +GL +G +      +G    + + LH +P      + +  +  S + A+    L
Sbjct: 200 FLHAYAEGLQLGVAARKAYGLGRYMVLPVSLHGLPRGAAVASCIYGATDSWRAALAAAAL 259

Query: 278 TAFGAISGTFISIYLRGSGEGL 213
           T F   S    +I  +    GL
Sbjct: 260 TGFAGPSAAISAILAKIDYSGL 281


>02_02_0626 + 12352984-12353193,12353666-12353767
          Length = 103

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
 Frame = +1

Query: 106 IGKICCSSLPITQGITDTVAI*INPPAVKGNIRDETRP---SPEPLK*IEI-KVPEIAPK 273
           +G++ C+SLP+ + IT  VA  I    +     ++ +P     +P K +EI K+P++A  
Sbjct: 21  VGRVTCTSLPLAKMITLFVAKAIRCAQIIAKSLEKLKPQGMKEKPKKTVEIFKLPKLAIL 80

Query: 274 AVSNCNSI 297
            +   N+I
Sbjct: 81  PIHFINTI 88


>04_04_1021 + 30190403-30190450,30191245-30192924
          Length = 575

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 272 FGAISGTFISIYLRGSGEGLVSSLILPFTAGGF 174
           FGA +  F+ +YL   G G V + +LPF A  F
Sbjct: 150 FGAQTIAFVGLYLVAFGSGGVRAALLPFGAEQF 182


>07_03_0158 + 14552665-14554209
          Length = 514

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 335 AILVQSGCSRKKAMLLQLLTAFGAISGTFISIYLRGSGEGLVSSL 201
           A    +GC    ++ L LL A   ++ +F+ +YLR +  GL   L
Sbjct: 81  AAAAAAGCLHAFSLRLGLLRADPVLANSFLLLYLRAASPGLARRL 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,276,367
Number of Sequences: 37544
Number of extensions: 305398
Number of successful extensions: 700
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)