Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_J20
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.4  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    26   7.1  

>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 643 CTIVCSTLCVVAIRVCCVNMPCAYTHV 563
           CT++CS   ++A R+C V     Y  V
Sbjct: 46  CTLLCSITVILAYRMCAVYHHVGYKDV 72


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 522 FKRVIFIQSVKAAITCVYAQGIFTQHTRMATTHNVL 629
           F+ ++    V   + CV+A  I+  + R   TH+ L
Sbjct: 153 FQGIVLADHVARLVLCVFATAIYLTYRRKRHTHDPL 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,352
Number of Sequences: 5004
Number of extensions: 56713
Number of successful extensions: 110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)