Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_J20
         (796 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068709-4|AAC19253.2|  297|Caenorhabditis elegans Serpentine re...    29   3.8  
AF067947-5|AAO25993.2|  380|Caenorhabditis elegans Hypothetical ...    29   5.1  
AC006714-10|AAK29727.2|  253|Caenorhabditis elegans F-box a prot...    28   8.9  

>AF068709-4|AAC19253.2|  297|Caenorhabditis elegans Serpentine
           receptor, class t protein26 protein.
          Length = 297

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 571 CTHKAYLHSTHVWQQHTMCCTL*YIIIVLLNRI*RHAQAENTSTF 705
           CTH  +++   +W     CC+    I++L+NR    A ++ +  F
Sbjct: 82  CTHPVFIYFLGLWGLGLWCCSCLLNILLLVNRTLNFANSKLSDYF 126


>AF067947-5|AAO25993.2|  380|Caenorhabditis elegans Hypothetical
           protein T10B5.2 protein.
          Length = 380

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 674 LYILLSNTIIMYYSVQHIVCCCHTCVLCKYALCVHTRN 561
           L  L+ NT +  YS  H++     C+   + +C+H RN
Sbjct: 226 LGFLVQNTTLDLYSAVHLIQQTFYCISDLHKVCLHQRN 263


>AC006714-10|AAK29727.2|  253|Caenorhabditis elegans F-box a protein
           protein 21 protein.
          Length = 253

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -1

Query: 412 APRCLHAAELVCWNITYKRLLAIM 341
           A +C+HA EL  W+ ++  +++I+
Sbjct: 83  AKKCVHATELTFWSFSFNDIISIL 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,523,030
Number of Sequences: 27780
Number of extensions: 331436
Number of successful extensions: 734
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)