Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_J19
(617 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 91 9e-20
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 28 1.2
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 27 1.6
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo... 27 2.2
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 27 2.9
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 26 5.0
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 26 5.0
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po... 25 6.6
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 25 8.8
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 8.8
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 25 8.8
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 91.5 bits (217), Expect = 9e-20
Identities = 51/156 (32%), Positives = 79/156 (50%)
Frame = -2
Query: 604 KRKGKGLDXSDLYADPILRFQKKYYLILMPIACFILPTVIPVYFWNESWINAFFVATLFR 425
+R G+ D SDL +DP + F +++L + FI P++ W + + +F A + R
Sbjct: 182 RRIGRS-DVSDLNSDPFVMFNHRHFLPIASFMAFIFPSLFCGLLWGD-YRGGYFYAGVCR 239
Query: 424 YTFILNVTWLVNSAAHKWGGKPYDKNIKPSENISVSVFALGEGFHNYHHTFPWDYKTAEL 245
F+ + T+ VNS AH G +P+D + ++ LGEG HNYHH FP DY+ L
Sbjct: 240 LVFVHHATFCVNSLAHLIGSQPFDDTNSARNHFITALVTLGEGNHNYHHAFPNDYRNG-L 298
Query: 244 GNNRLNFTTNFINFFAKIGWAYDLKTVSDEIIKNRV 137
+ T FI + G AY+L T D I+ +
Sbjct: 299 RWYEYDPTKIFIYIASLFGLAYNLNTFPDNEIQKGI 334
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 273 NVWW*LWNPSPSANTDTEMFSDGLIFL 353
N+W W P NTDT F GLI L
Sbjct: 400 NIWHIWWAPIMYPNTDTPRFIKGLIGL 426
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 443 EERVNPRLIPKIHRNHCWQNEASDW 517
+ERV + IPK+HR+ E+ DW
Sbjct: 162 DERVVSKDIPKLHRDSVESPESQDW 186
>SPBC2A9.06c |||di-trans,
poly-cis-decaprenylcistransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 27.1 bits (57), Expect = 2.2
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = -2
Query: 271 PWDYKTAELGNNRLNFTTNFINFF 200
PW + E+ ++ + +TTN++ FF
Sbjct: 220 PWQLRLCEIFHDPILYTTNYLTFF 243
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 125 TGAVHTVLYDLVRYSFQIVCPSNFSKE 205
+ A+++ L DLV+YSFQ P +F KE
Sbjct: 718 SSAIYSFLSDLVQYSFQ---PDSFIKE 741
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 517 PIACFILPTVIPVYFW 470
P C +LP +IPVY W
Sbjct: 150 PHLCTVLPIMIPVYKW 165
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 430 KESQRRTR*SKTHSKNTPESL-LAK*SKRLASELNSTFSGIEEWDQHISH 576
K+ Q+ K K T ++ + ++ S+ + FS +EE D+H SH
Sbjct: 68 KKDQKEASEKKKKGKRTSPTIEMTSLGSKVTSKNYNEFSTLEEEDEHNSH 117
>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 502 ILPTVIPVYFWNESWINAFFVATLFR 425
ILP I +Y W + I+ FF L R
Sbjct: 335 ILPNQIQIYVWYGASISIFFALILLR 360
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 424 NGKESQRRTR*SKTHSKNTPESLLAK*SKRL 516
+GKES +R + K K + L K SKRL
Sbjct: 134 SGKESSKREKSKKKKEKKEKKDKLKKKSKRL 164
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 466 HSKNTPESLLAK*SKRLASELNSTFSGIE 552
+S NTPESLL ++ +L+S+ +E
Sbjct: 252 NSSNTPESLLIDYQSKIPEDLSSSLLPLE 280
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 25.0 bits (52), Expect = 8.8
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -2
Query: 433 LFRYTFILNVTWLVNSAAHK 374
+FR +++ +TWL N+ A+K
Sbjct: 22 IFRANYLVPLTWLKNNVAYK 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,837
Number of Sequences: 5004
Number of extensions: 56888
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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