Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_J19
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472...    29   3.0  
04_03_0799 - 19805190-19805749,19806316-19806403                       29   3.0  
11_01_0447 + 3464791-3465358,3465364-3465641                           29   3.9  
08_02_0233 + 14593639-14594468,14594480-14594986,14595362-145958...    28   6.8  
03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597...    27   9.0  

>11_04_0330 -
           16446685-16446776,16446968-16447119,16447172-16447281,
           16447518-16447619,16447705-16447854,16448195-16448350,
           16448552-16448713,16449549-16449638,16450152-16450271,
           16451323-16451418,16451502-16451638,16453400-16453622
          Length = 529

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 517 PIACFILPTVIPVYFWNESWINAFFVATLFRYTF 416
           P A  +L     +Y W +SWINA   A  + Y F
Sbjct: 197 PKATAVLVRNHGIYVWGDSWINAKTQAECYHYLF 230


>04_03_0799 - 19805190-19805749,19806316-19806403
          Length = 215

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 79  CPDLYRPSPRGSESHHRCGSHG 144
           CP   +P P+  E  H CG HG
Sbjct: 126 CPAPPKPKPKPCECTHHCGGHG 147


>11_01_0447 + 3464791-3465358,3465364-3465641
          Length = 281

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +1

Query: 412 K*MYNGKESQRRTR*SKTHSKNTPESLLAK*SKRLASELNSTFSGIEEWDQHISHLXRD 588
           K + N +E+       +T S  +PE L  K ++ L S L + F+ IE     I H+ R+
Sbjct: 8   KALLNSQEAAASVAAGRTRS--SPEELAQKKNELLRSYLGNAFADIEHLVSQIEHIQRE 64


>08_02_0233 +
           14593639-14594468,14594480-14594986,14595362-14595856,
           14596592-14596662,14597116-14597199,14597328-14597446,
           14598029-14598109,14598397-14598411
          Length = 733

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 279 WW*LWNPSPSANTDTEMFSDGLIFLS*GFPPHL*AAEFTSH 401
           W  LW  + + N DTE + D   +    FP H  +A F  H
Sbjct: 39  WRPLWRQAGTVNLDTEPYLDPAAYRGNNFPEHRRSA-FVDH 78


>03_02_0663 +
           10256898-10258915,10259162-10259248,10259463-10259724,
           10259802-10260111,10260535-10260645,10260861-10261090
          Length = 1005

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -2

Query: 277 TFPWDYKTAELGNNRLNFTTNFINFFAKI 191
           T+P+ Y+ A++  +R  + + FIN +  +
Sbjct: 884 TYPYRYRAADVNESRHTYMSRFINIYMNV 912


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,132,406
Number of Sequences: 37544
Number of extensions: 366703
Number of successful extensions: 869
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)