Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_J12
(714 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 32 0.094
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 27 2.0
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 27 3.5
SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||... 27 3.5
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 26 4.7
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 26 4.7
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 26 4.7
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 26 6.1
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 6.1
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 26 6.1
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 31.9 bits (69), Expect = 0.094
Identities = 19/65 (29%), Positives = 36/65 (55%)
Frame = -2
Query: 506 EQSESDFYKVGEVYNEHLNETLMGKYEQRHQIIKEKYFKQNMPNLLTWSEKEQIRHLATT 327
E E+D K+ + EHL++ + E++ Q+ KEKY K+N +++ + R L+T
Sbjct: 85 EDEEAD--KIYQSVEEHLSKRRKSQREKQEQLQKEKYEKENPKVSSQFADLK--RGLSTL 140
Query: 326 QPDEW 312
++W
Sbjct: 141 TDEDW 145
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -2
Query: 491 DFYKVGEVYNEHLNETLMGKYEQRHQIIKEKYFKQNMPNLLTWSEKEQIRHL 336
DF + + Y HL L E HQI+ YF +N+ + E ++HL
Sbjct: 129 DFVETEDFY--HLVMELAEGGELFHQIVNFTYFSENLARHIIIQVAEAVKHL 178
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 26.6 bits (56), Expect = 3.5
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -2
Query: 185 WKELKEG--TLSISEDVRAHFLKFSERTIPPLNRNSVKKIDVTPEEKIGEFENII 27
WKE E I+ DV F+ RT+P L + + DV EE + NII
Sbjct: 509 WKESLEAKAVAYINVDVAVSGDTFTARTVPGLKKVIQRAFDVANEEDEMKAANII 563
>SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 26.6 bits (56), Expect = 3.5
Identities = 21/83 (25%), Positives = 41/83 (49%)
Frame = -2
Query: 635 IVRNLRNRMRLDSFGPNPGLDKRIAAFKRDGFKVDDEDAEEYVEQSESDFYKVGEVYNEH 456
+ + +R+R +L+ FG NP D+ I + +D V E + EQS + Y
Sbjct: 11 VSQKIRDRRKLEEFGQNP--DEEIESSLKD---VRQELQKLNEEQSRLEKNAQIPEYRVR 65
Query: 455 LNETLMGKYEQRHQIIKEKYFKQ 387
+E + + ++R + +E++ KQ
Sbjct: 66 ESEAFLIRMQRRLESAEEEFEKQ 88
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 479 VGEVYNEHLNETLMGKYEQRHQIIKEKYFKQNMPN 375
+G +Y +HL L + +Q ++I + QN PN
Sbjct: 393 IGMLYRKHLQIILQHRQQQLNKIQNARMNSQNAPN 427
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -2
Query: 563 AAFKRDGFKVDDEDAEEYVEQSESDFYKVGEVYNEHLNETLMGKYEQRHQIIKEKY 396
A +K + K + D V E DF+KV +V NE ++ E + +K+
Sbjct: 529 AEYKGESAKSSESDL--VVSDDEEDFFKVSKVANESISSNHEKLMESESDRLSKKW 582
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 26.2 bits (55), Expect = 4.7
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Frame = -2
Query: 473 EVYNEHLNE--TLMGKYEQRH----QIIKEKYFKQNMPNLLTWSEKEQIRHLATTQPDEW 312
+++N ++ + TL+GK Q ++ KE F Q+ L E E++RHLAT+ +++
Sbjct: 347 DIHNVNIKQITTLIGKMSQVQIECKRLRKENLFLQSERTHLL-RELEELRHLATSAKEDF 405
Query: 311 TP-EKL 297
EKL
Sbjct: 406 VKVEKL 411
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 674 TARLRHLCPSAKIIVRNLRNRMRLDSFGPNPGLDKRI 564
T + H CPS+ +++ R L +FG P D +
Sbjct: 35 TRKFHHACPSSSKVLKYFRITGCLINFGKQPANDHHL 71
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = +1
Query: 205 SCRAMRCSVAGFQTCLSNFFTTGTVTGKLSANFSGVHSSGCVVAKCLICSFSLQV 369
+ R RC +CL F T T +A SG C C IC S+++
Sbjct: 224 AARMSRCGHVYCFSCLLRFVETPTAAEVKAAETSGTKIVKCGHRSCPICWDSIRL 278
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.8 bits (54), Expect = 6.1
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = -2
Query: 542 FKVDDEDAEEYVEQSESDFYKVGEVYNEHLNETLMGKYEQRHQIIKEKYFKQNMPNLLTW 363
F V + A Y S S F K + + L G ++RHQ +K + Q NLL +
Sbjct: 210 FSVSESIANSYSNSSISAFTKWFDRVDA---SELPGSEKERHQSLKLQSQSQTSKNLLAF 266
Query: 362 SEKEQ 348
++ ++
Sbjct: 267 NDAQK 271
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,034
Number of Sequences: 5004
Number of extensions: 55267
Number of successful extensions: 227
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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