Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_J12
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0277 + 23780779-23781103,23781954-23782363,23782487-237830... 31 1.2
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 30 2.1
11_01_0782 + 6543906-6544702,6545717-6547850 29 3.7
03_05_0804 + 27835508-27835805,27836372-27836421,27837306-278379... 29 4.8
02_02_0647 - 12613356-12614040,12615034-12615219,12617168-12617475 29 4.8
11_06_0211 + 21305535-21305895,21306512-21306761,21307543-213076... 28 6.4
06_02_0266 - 13593346-13594151,13594425-13594743 28 6.4
07_03_1774 + 29425486-29425831,29426018-29426235,29426337-294271... 28 8.5
>05_05_0277 +
23780779-23781103,23781954-23782363,23782487-23783016,
23785904-23785991
Length = 450
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -2
Query: 533 DDEDAEEYVEQSESDFYKVGEVYNEHLNETLMGKYEQRHQIIK 405
DD+ EE E+ E D G N+HL E +G+YE R IK
Sbjct: 74 DDDHHEESAEEEEEDNQLQG--LNKHLAEYRIGQYEIRGATIK 114
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 29.9 bits (64), Expect = 2.1
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = -2
Query: 698 IIPEEXMFTA--RLRHLCPSAKIIVRNLRNRMRLDSFGPNPGLDKRIAAFKRDGFKVDDE 525
I+ E M TA R + LCP + +RN+ D+ NP + +F +G D
Sbjct: 3164 IVDREGMMTAPYREKSLCPDTQHALRNVLEMSPSDNLTDNPFAGQEHGSFS-EGSTTDSR 3222
Query: 524 DA--EEYVEQSESDFYKV 477
DA +E S S KV
Sbjct: 3223 DAITDESATTSTSGSEKV 3240
>11_01_0782 + 6543906-6544702,6545717-6547850
Length = 976
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/27 (40%), Positives = 22/27 (81%)
Frame = -3
Query: 553 NETASKLTTKMLKSMSNNRRVIFIKLV 473
+ +A+KLTT +L ++SN R++ ++KL+
Sbjct: 778 SSSATKLTTGLLSALSNLRKLKYLKLI 804
>03_05_0804 +
27835508-27835805,27836372-27836421,27837306-27837998,
27838077-27838388,27838528-27838698
Length = 507
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -2
Query: 653 CPSAKIIVRNLR--NRMRLDSFGPNPGLDKRIAAFKRDGFKVDDEDAEEYVEQSESDFYK 480
C S K+I LR + +D+FG R AA + +GF+ + +E VE+ E +
Sbjct: 219 CYSNKVIRNGLRVSDLRHMDTFGAKLNTLLRDAALRFEGFEYSTKTLKEEVEKYEKFAER 278
Query: 479 VG 474
+G
Sbjct: 279 LG 280
>02_02_0647 - 12613356-12614040,12615034-12615219,12617168-12617475
Length = 392
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 483 IKITLRLFDILFSIFVVNFEAVSFECS-NSLVQTWIWSERV*PHSVSKVTDN 635
+++ R FD+ F F NF A+ CS + L I++ R+ ++++ + DN
Sbjct: 222 LRLNHRWFDVQFDEFRDNFHALGIACSMHRLRHLQIFANRLRNNALAAILDN 273
>11_06_0211 +
21305535-21305895,21306512-21306761,21307543-21307652,
21308836-21309067,21310233-21310603,21311434-21311507,
21311727-21311880,21312251-21312434,21313066-21313291,
21313704-21314135,21314399-21314456,21314748-21314829,
21315350-21315421,21316594-21316737,21317379-21317457,
21318023-21318105,21318198-21318252,21318488-21318778
Length = 1085
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/72 (19%), Positives = 30/72 (41%)
Frame = -2
Query: 527 EDAEEYVEQSESDFYKVGEVYNEHLNETLMGKYEQRHQIIKEKYFKQNMPNLLTWSEKEQ 348
E+ + E+ + E + L E + Y + + + + L+T + E+
Sbjct: 707 ENNMSFTEEPLKHIARFIESFESELKELWL-VYRNEGRSLSKLIYTAEETKLVTGNNNER 765
Query: 347 IRHLATTQPDEW 312
+RH+ QP +W
Sbjct: 766 VRHIQVLQPSKW 777
>06_02_0266 - 13593346-13594151,13594425-13594743
Length = 374
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/42 (26%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = -2
Query: 542 FKVDDEDAEEYVEQSESDFYKVGEVYNEHL--NETLMGKYEQ 423
F DD + +VE + ++ ++V E+ +HL +T++G++++
Sbjct: 194 FSTDDAPIDAFVEDNTAENHEVKEMSRDHLVQKDTVIGEHQE 235
>07_03_1774 +
29425486-29425831,29426018-29426235,29426337-29427131,
29427206-29428074,29428317-29428749,29429263-29429859
Length = 1085
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +1
Query: 37 SNSPIFSSGVTSIFFTEFLLRGGIVLSENLRKCALTSSEMLKVPSFSSFQFLITDWSCRA 216
+N+ + SG F + L G+ S K +T ++++ + S QFL DW+ R
Sbjct: 498 ANTFVVGSGALGCEFLKNLALMGVSCSPK-GKLTITDDDVIEKSNLSR-QFLFRDWNIRQ 555
Query: 217 MRCSVA 234
+ +VA
Sbjct: 556 AKSTVA 561
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,991,536
Number of Sequences: 37544
Number of extensions: 299776
Number of successful extensions: 874
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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