Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_J10
(429 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces pomb... 31 0.076
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc... 28 0.71
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 2.9
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch... 25 5.0
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 5.0
SPCC61.05 |||S. pombe specific multicopy membrane protein family... 25 6.6
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 25 6.6
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 24 8.7
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 8.7
>SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 96
Score = 31.1 bits (67), Expect = 0.076
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -1
Query: 240 SQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKKVGMAPFYQLLVGSMVFFY 61
S ++ I ++ R P+ S +++ W +K K AP L+ +VF Y
Sbjct: 25 SSARMGRIVDFYSRLPHGPAPKKS--SNSFFSWYYKKYLGKNASGAPLLHLVGAVLVFSY 82
Query: 60 AIN-YGRIKHHKNY 22
A Y I+HH+ +
Sbjct: 83 ASEYYYHIRHHEEH 96
>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
scaffold protein Isu1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 192
Score = 27.9 bits (59), Expect = 0.71
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 328 SHIFRKARCTFLKINSSRYLPNTYFSFSERSIH 426
S + R A FLK NSS+++P + S R H
Sbjct: 23 SLLARPANLQFLKTNSSKFVPQVTANVSRRMYH 55
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 2.9
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Frame = -1
Query: 348 GFSKNMAFGDYPKEYNPAVHGPYDPARYYGKPDTPFSQLK-LNEIGSWFGRRSKTPSAVA 172
G N +Y ++ P PY P Y G PF Q + + + FG S+ +VA
Sbjct: 28 GMPINQGGMNYQQQTYP-YQQPYQPDGYAGNTMLPFQQSQPATQFNNGFGYASQPTGSVA 86
Query: 171 GAFSRAWWRWQHKYVQPKKVGMAPFYQ 91
+ + + + P+ + F Q
Sbjct: 87 DYGQQQQQMYGYNGMMPQTMNNTGFMQ 113
>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 234
Score = 25.0 bits (52), Expect = 5.0
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 163 ESSGHGRRSLAAATEPRTDFVQLQLAEWSIRFSIVAGRIVRPMY 294
ESS HG SL A +P T V L W+ +F+ R+ Y
Sbjct: 24 ESSAHGDASLGQADKPLTVDV---LDAWTTQFTKKQTRVFHEAY 64
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.0 bits (52), Expect = 5.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 354 ASGFSKNMAFGDYPKEYNPAVHGPYDPARYYGKPD 250
A S+N A+G P+ Y P P P Y +P+
Sbjct: 87 APAASQNRAYGAAPQPYPPQGGYPQQPYYYPNQPN 121
>SPCC61.05 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 469
Score = 24.6 bits (51), Expect = 6.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 188 LRLPWPELSVEPGGD 144
+R+PWP L+VE GD
Sbjct: 174 IRIPWPVLTVEFYGD 188
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 24.6 bits (51), Expect = 6.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 316 VITESHIFRKARCTFLKINSSRYLPNTYFSFSE 414
+I H F A C F+ +S++ L N Y +E
Sbjct: 251 LIVAGHSFGAATCAFISGSSTKSLYNDYMFHTE 283
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 24.2 bits (50), Expect = 8.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 158 EPGGDGNISTYNLRRLAWLHSTNYSLAAWSSSMPSTM 48
EP G+G+I+T N RL L S + A +++ T+
Sbjct: 289 EPNGEGSIATINGLRLGRLPSQKVNWAEINAAWGMTV 325
>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 103
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = -1
Query: 135 KYVQPKKVGMAPFYQLLVGSMVFFYAINYGRIKHHKNYK 19
K + PK + Y + ++F+ +N KH+K Y+
Sbjct: 7 KQMIPKLLPFIFIYLSVANKIMFYCILNERAFKHYKTYR 45
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,903,604
Number of Sequences: 5004
Number of extensions: 41179
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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