Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_J09
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0012 - 7346282-7347136,7347234-7347593 46 2e-05
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 46 2e-05
11_01_0750 - 6315126-6315896,6316371-6316784 44 9e-05
11_02_0011 - 7337618-7338496,7338596-7338991 44 2e-04
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 43 2e-04
11_01_0771 + 6453130-6454488 42 5e-04
05_06_0044 - 25150322-25151260 33 0.16
01_06_0824 - 32243495-32244319,32244449-32244859 33 0.21
01_01_1152 + 9170628-9171899 33 0.28
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 31 0.65
06_03_0673 + 23394027-23394094,23394267-23394539,23394613-233949... 28 6.0
12_01_1067 - 11009508-11010071,11010122-11010679 28 8.0
11_01_0767 + 6438648-6438809,6439146-6440000 28 8.0
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 46.4 bits (105), Expect = 2e-05
Identities = 40/168 (23%), Positives = 75/168 (44%), Gaps = 9/168 (5%)
Frame = -1
Query: 611 YGTDGKYSMLVILPHPRTKIADMYKNFADVNLKDVFKQLQKD--VDDFGLEDVDVKLPRF 438
YG + SM + LP R + + A + +D ++ D+++PRF
Sbjct: 236 YGENVGLSMYIFLPDARDGLPALVDKMAVASSGTASSSFLRDHRPGRRRIKVGDLRVPRF 295
Query: 437 QISTNVVLNKPLNDMGV---YDIFQPDLANFQRITKENIFVSAIVHKADIEXXXXXXXXX 267
++S +N+ L MG+ +D+ + DL+ I E + V ++H+A +E
Sbjct: 296 KVSFYSEMNEVLKGMGIGAAFDVGKVDLSGM--IDGELVVVEKVMHRAVVEVNEEGTEAA 353
Query: 266 XXXXXXXTD---RISAPA-FHANRPFVYFVMEKTTTTVIFSGIYSKPT 135
+++P F A+ PF +FV+E+ + V+F+G PT
Sbjct: 354 AATACTMKFLCLTLTSPVDFVADHPFAFFVVEEKSDAVLFAGHVLDPT 401
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 46.4 bits (105), Expect = 2e-05
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 9/167 (5%)
Frame = -1
Query: 626 VLELPYGTDG---KYSMLVILPHPRTKIADMYKNFADVNLKDVFKQLQKDVDDFGLEDVD 456
VL+LPY G ++SM ++LP + + + + +N + F L+K + +
Sbjct: 299 VLKLPYQQGGDKRQFSMYILLPEAQDGLWSLAEK---LNSEPEF--LEKHIPTRQVTVGQ 353
Query: 455 VKLPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRITK---ENIFVSAIVHKADIEXXX 285
KLP+F+IS + L +G++ F + + + +N+FVS++ HK+ +E
Sbjct: 354 FKLPKFKISFGFEASDLLKSLGLHLPFSSEADLTEMVDSPEGKNLFVSSVFHKSFVEVNE 413
Query: 284 XXXXXXXXXXXXXTDRISAPA---FHANRPFVYFVMEKTTTTVIFSG 153
T R SAP F A+ PF++ + E T V+F G
Sbjct: 414 EGTEAAAATAAVITLR-SAPIAEDFVADHPFLFLIQEDMTGVVLFVG 459
Score = 41.5 bits (93), Expect = 6e-04
Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 7/170 (4%)
Frame = -1
Query: 626 VLELPY---GTDGKYSMLVILPHPRTKIADMYKNFADVNLKDVFKQLQKDVDDFGLEDVD 456
VL+LPY G ++SM ++LP + + + + +N + F ++ + +
Sbjct: 551 VLKLPYLQGGDKRQFSMYILLPEAQDGLWSLAEK---LNSEPEF--MENHIPMRPVHVGQ 605
Query: 455 VKLPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRITK---ENIFVSAIVHKADIE-XX 288
KLP+F+IS + L +G+ +F ++ + + +N+FVS++ HK+ IE
Sbjct: 606 FKLPKFKISFGFGASGLLKGLGLPLLFGSEVDLIEMVDSPGAQNLFVSSVFHKSFIEVNE 665
Query: 287 XXXXXXXXXXXXXXTDRISAPAFHANRPFVYFVMEKTTTTVIFSGIYSKP 138
R F A+ PF++ + E T ++F G P
Sbjct: 666 EGTEATAAVMVSMEHSRPRRLNFVADHPFMFLIREDVTGVILFIGHVVNP 715
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 44.4 bits (100), Expect = 9e-05
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 9/173 (5%)
Frame = -1
Query: 626 VLELPYG---TDGKYSMLVILPHPRTKIADM-YKNFADVNLKDVFKQLQKDVDDFGLEDV 459
V++LPY + K+SM + LP + ++ K F++ + +K V
Sbjct: 228 VIKLPYKQGKNERKFSMYIFLPDDHDGLFELTQKIFSEPMFLEQHLPTEKC-------HV 280
Query: 458 DVKLPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRITKEN-----IFVSAIVHKADIE 294
+ +P F+IS + + L DMG+ F + A F + KE+ +F+S ++HKA +E
Sbjct: 281 GISVPNFKISFQIDVKDFLKDMGLELPFLRE-AEFSDMIKEDDSSGPLFLSDVLHKAVLE 339
Query: 293 XXXXXXXXXXXXXXXXTDRISAPAFHANRPFVYFVMEKTTTTVIFSGIYSKPT 135
+ A F A+ PF + + E+ + TVIF G P+
Sbjct: 340 VDQKGIEETSVSMGLGKP-LPAQHFKADHPFFFMIREEVSGTVIFMGHVLDPS 391
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 43.6 bits (98), Expect = 2e-04
Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 8/186 (4%)
Frame = -1
Query: 668 DSSRSQTLKKLKAFVLELPYGTDGKYSMLVILPHPRTKIADMYKNFADVNLKDVFKQLQK 489
D + T + +LE G + SM + LP R + + A + F L+
Sbjct: 237 DGGDTITNSSITRAILEHYGGENVGLSMYIFLPDERDGLPALVDKMAASSSSSSF--LRD 294
Query: 488 DVDDFGLEDVDVKLPRFQISTNVVLNKPLNDMGV---YDIFQPDLANFQRITKEN---IF 327
E D+++PRF++S +N L MGV +D + DL+ + +
Sbjct: 295 HRPTRRREVGDLRVPRFKVSFYSQINGVLQGMGVTAAFDAGEADLSGMAEGVDQRGGGLV 354
Query: 326 VSAIVHKADIEXXXXXXXXXXXXXXXXTD-RISAPA-FHANRPFVYFVMEKTTTTVIFSG 153
V + H+A +E +S P F A+ PF +FV+E+T+ V+F+G
Sbjct: 355 VEEVFHRAVVEVNEEGTEAAASTACTIRLLSMSYPEDFVADHPFAFFVVEETSGAVLFAG 414
Query: 152 IYSKPT 135
PT
Sbjct: 415 HVLDPT 420
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 43.2 bits (97), Expect = 2e-04
Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 10/186 (5%)
Frame = -1
Query: 665 SSRSQTLKKLKAF-VLELPY--GTD-GKYSMLVILPHPRTKIADMYKNFADVNLKDVFKQ 498
+S+ Q L + VL+LPY G D ++SM ++LP + ++ A +N + F
Sbjct: 77 TSKKQYLSSYDSLKVLKLPYQKGRDLRQFSMYILLPEAQD---GLWSLAAKLNSEPEF-- 131
Query: 497 LQKDVDDFGLEDVDVKLPRFQISTNVVLNKPLNDMGVYDIF--QPDLANFQRIT-KENIF 327
L+K + + KLP+F+IS + L +G+ F + DL + N+F
Sbjct: 132 LEKRIPTRQVTVGKFKLPKFKISFGFEASDLLKILGLQLPFSSKADLTGMVGSPERHNLF 191
Query: 326 VSAIVHKADIEXXXXXXXXXXXXXXXXTDRISAPA---FHANRPFVYFVMEKTTTTVIFS 156
VS++ HK+ ++ + R SAP F A+ PF++ + E T V+F
Sbjct: 192 VSSLFHKSFVQVDEEGTEAAAASAAVVSFR-SAPVTVDFVADHPFLFLIREDMTGVVLFI 250
Query: 155 GIYSKP 138
G P
Sbjct: 251 GHVVNP 256
>11_01_0771 + 6453130-6454488
Length = 452
Score = 41.9 bits (94), Expect = 5e-04
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Frame = -1
Query: 458 DVKLPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRITKEN-----IFVSAIVHKADIE 294
+ ++P+F++S + L +G+ F P+LA+ + +++ +FV I HKA IE
Sbjct: 335 EFRVPKFKVSCGGSVVGALEQLGLRLPFSPELADLSDMVEDDGSGWPLFVGDIQHKAVIE 394
Query: 293 XXXXXXXXXXXXXXXXTDRISAPA---FHANRPFVYFVMEKTTTTVIFSGIYSKPTV 132
P F A PF YF++E+ ++ V+F+G P++
Sbjct: 395 VNEEGTVAAAATMTRMLPSGVPPPPVDFVAEHPFAYFIVEEMSSAVVFAGHIVDPSM 451
>05_06_0044 - 25150322-25151260
Length = 312
Score = 33.5 bits (73), Expect = 0.16
Identities = 33/168 (19%), Positives = 71/168 (42%), Gaps = 8/168 (4%)
Frame = -1
Query: 608 GTDGKYSMLVILPHPRTKIADMYKNFADVNLKDVFKQLQKDVDDFGLEDVDVKLPRFQIS 429
G D ++M + LP R + ++ + A N ++ + ++ K+P+F++S
Sbjct: 148 GGDKMFAMYIYLPDDRDGLPELARKLAS-NPAAFLRRTIVPAQPVAVGEL--KIPKFEVS 204
Query: 428 TNVVLNKPLNDMGVYDIFQPDLAN-FQRIT---KENIFVSAIVHKADI----EXXXXXXX 273
V ++ L + G+ F P N F + + VS+++H+ + E
Sbjct: 205 LKVEASRLLREFGLDLPFLPAADNSFSGMLLDPPQGTAVSSLLHQCFVNVNEEGTVAAAG 264
Query: 272 XXXXXXXXXTDRISAPAFHANRPFVYFVMEKTTTTVIFSGIYSKPTVY 129
F A+ PF++F++E+ + V+F+G P ++
Sbjct: 265 TVGEIMGFAMPDDQIVDFVADHPFLFFIVEEVSGLVVFAGQVVNPLLH 312
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 33.1 bits (72), Expect = 0.21
Identities = 43/186 (23%), Positives = 73/186 (39%), Gaps = 22/186 (11%)
Frame = -1
Query: 626 VLELPYGTDGK---------YSMLVILPHPRTKIADMYKNFADVNLKDVFKQLQKDVDDF 474
VL LPY G+ +SM + LP R + DM + D ++
Sbjct: 227 VLRLPYARGGRGRGRDTGRLFSMYIYLPDERHGLPDMLRKLCS----DPAALIESSAALT 282
Query: 473 GLEDVDV-KLPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRITK-----ENIFVSAIV 312
V +PRF +S + L +G+ F+ A+ + + E I VSA+
Sbjct: 283 EKVPVGAFMVPRFTLSYKTNAAETLRQLGLRLPFEYPGADLSEMVESSPEAEKIVVSAVY 342
Query: 311 HKADIEXXXXXXXXXXXXXXXXTDRISAPA-------FHANRPFVYFVMEKTTTTVIFSG 153
H++ +E T +AP+ F A+ PF++ + E T V+F+G
Sbjct: 343 HESFVEVNEEGTEAAAATAVVMTLGCAAPSAPVHVVDFVADHPFMFLIKEDLTGVVVFAG 402
Query: 152 IYSKPT 135
+ P+
Sbjct: 403 QVTNPS 408
>01_01_1152 + 9170628-9171899
Length = 423
Score = 32.7 bits (71), Expect = 0.28
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Frame = -1
Query: 449 LPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRITKENIFVSAIVHKADIEXXXXXXXX 270
+P+F+ S + +GV F + + +F++ + H+A IE
Sbjct: 314 VPKFKFSFKFEAKSDMRKLGVTRAFAGGDFSGMVTGGDGLFIAEVYHQATIEVDELGTVA 373
Query: 269 XXXXXXXXTDRISA--PA-FHANRPFVYFVMEKTTTTVIFSGIYSKP 138
+ S+ P F A+RPF++ V+E+ T V+F G P
Sbjct: 374 AASTAVVMMQKGSSLPPVDFVADRPFLFAVVEELTGAVLFLGHVVNP 420
>03_05_0001 -
19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 31.5 bits (68), Expect = 0.65
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 539 CTCLRSSFSGAGV*PASSTFRRCRKEVP 622
C CL S SG G+ PA +F CR + P
Sbjct: 536 CPCLPESSSGCGILPAPPSFNPCRCDKP 563
>06_03_0673 +
23394027-23394094,23394267-23394539,23394613-23394958,
23395031-23395168,23395260-23395385,23395464-23395652,
23395723-23396202,23396274-23397236
Length = 860
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 293 PLYQLYALWPTRIYSPL*SAGSWLSLAGICRTLPCRLMAYLGR 421
P+ +ALW T + L A SWL +A + + P + YL R
Sbjct: 69 PVADAHALWVTSVACELWLAASWL-IAQLPKLSPANRVTYLDR 110
>12_01_1067 - 11009508-11010071,11010122-11010679
Length = 373
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 643 RSLRPSYWNFLTAPTESTRCWSYSRTRERRSQTC 542
+ L PS W+ L A T +SRT E R QTC
Sbjct: 164 KGLTPSSWDHLDAVAGGT---FFSRTSEERLQTC 194
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -1
Query: 221 FHANRPFVYFVMEKTTTTVIFSGIYSKPT 135
F A+ PF +F++E+ + ++F+G P+
Sbjct: 307 FVADHPFAFFIVEERSQAIVFAGHVLDPS 335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,216,983
Number of Sequences: 37544
Number of extensions: 293390
Number of successful extensions: 734
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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