Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_J06
(704 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D84145-1|BAA19984.1| 190|Homo sapiens WS-3 protein. 123 5e-28
CR456851-1|CAG33132.1| 190|Homo sapiens DCTN6 protein. 123 5e-28
BC013175-1|AAH13175.1| 190|Homo sapiens dynactin 6 protein. 123 5e-28
AF433663-1|AAP97314.1| 384|Homo sapiens unknown protein. 39 0.020
BX088650-16|CAM26307.1| 487|Homo sapiens synaptic Ras GTPase ac... 34 0.57
BX088650-15|CAM26306.1| 1284|Homo sapiens synaptic Ras GTPase ac... 34 0.57
BX088650-14|CAM26305.1| 1343|Homo sapiens synaptic Ras GTPase ac... 34 0.57
BX088650-13|CAM26304.1| 1299|Homo sapiens synaptic Ras GTPase ac... 34 0.57
AL713634-1|CAD28452.1| 902|Homo sapiens hypothetical protein pr... 34 0.57
AL662799-16|CAM25573.1| 487|Homo sapiens synaptic Ras GTPase ac... 34 0.57
AL662799-15|CAM25572.1| 1284|Homo sapiens synaptic Ras GTPase ac... 34 0.57
AL662799-14|CAI18276.2| 1343|Homo sapiens synaptic Ras GTPase ac... 34 0.57
AB067525-1|BAB67831.2| 1376|Homo sapiens KIAA1938 protein protein. 34 0.57
BC028124-1|AAH28124.1| 384|Homo sapiens chromosome 17 open read... 31 3.0
BC004191-1|AAH04191.1| 182|Homo sapiens dynactin 5 (p25) protein. 31 5.3
AK027387-1|BAB55077.1| 182|Homo sapiens protein ( Homo sapiens ... 31 5.3
>D84145-1|BAA19984.1| 190|Homo sapiens WS-3 protein.
Length = 190
Score = 123 bits (297), Expect = 5e-28
Identities = 64/165 (38%), Positives = 95/165 (57%), Gaps = 5/165 (3%)
Frame = -1
Query: 701 VCEDCTLEGDITIGGGTVIHPRVSXXXXXXXXXXXXXXXXXXYSTIIHKKSDK----QEN 534
VC + + GD+TIG TVIHP+ + II+ D E+
Sbjct: 17 VCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTED 76
Query: 533 P-PKPLFIGAHNVFEVACKLESIYGHVGESNVFECRSFVGEEVKVGSGCVIGAACTLTAP 357
P PKP+ IG +NVFEV C +++ +G++NV E +++VG V + SGC+IGA C L
Sbjct: 77 PEPKPMIIGTNNVFEVGCYSQAM--KMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTF 134
Query: 356 QILADNTVIWGSEHHVREALEKQPSQLLQLDFLSKVMPNYHRLRK 222
+++ +NTVI+G++ R E+ Q LQLDFL K++PNYH L+K
Sbjct: 135 EVIPENTVIYGADCLRRVQTERPQPQTLQLDFLMKILPNYHHLKK 179
>CR456851-1|CAG33132.1| 190|Homo sapiens DCTN6 protein.
Length = 190
Score = 123 bits (297), Expect = 5e-28
Identities = 64/165 (38%), Positives = 95/165 (57%), Gaps = 5/165 (3%)
Frame = -1
Query: 701 VCEDCTLEGDITIGGGTVIHPRVSXXXXXXXXXXXXXXXXXXYSTIIHKKSDK----QEN 534
VC + + GD+TIG TVIHP+ + II+ D E+
Sbjct: 17 VCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTED 76
Query: 533 P-PKPLFIGAHNVFEVACKLESIYGHVGESNVFECRSFVGEEVKVGSGCVIGAACTLTAP 357
P PKP+ IG +NVFEV C +++ +G++NV E +++VG V + SGC+IGA C L
Sbjct: 77 PEPKPMIIGTNNVFEVGCYSQAM--KMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTF 134
Query: 356 QILADNTVIWGSEHHVREALEKQPSQLLQLDFLSKVMPNYHRLRK 222
+++ +NTVI+G++ R E+ Q LQLDFL K++PNYH L+K
Sbjct: 135 EVIPENTVIYGADCLRRVQTERPQPQTLQLDFLMKILPNYHHLKK 179
>BC013175-1|AAH13175.1| 190|Homo sapiens dynactin 6 protein.
Length = 190
Score = 123 bits (297), Expect = 5e-28
Identities = 64/165 (38%), Positives = 95/165 (57%), Gaps = 5/165 (3%)
Frame = -1
Query: 701 VCEDCTLEGDITIGGGTVIHPRVSXXXXXXXXXXXXXXXXXXYSTIIHKKSDK----QEN 534
VC + + GD+TIG TVIHP+ + II+ D E+
Sbjct: 17 VCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTED 76
Query: 533 P-PKPLFIGAHNVFEVACKLESIYGHVGESNVFECRSFVGEEVKVGSGCVIGAACTLTAP 357
P PKP+ IG +NVFEV C +++ +G++NV E +++VG V + SGC+IGA C L
Sbjct: 77 PEPKPMIIGTNNVFEVGCYSQAM--KMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTF 134
Query: 356 QILADNTVIWGSEHHVREALEKQPSQLLQLDFLSKVMPNYHRLRK 222
+++ +NTVI+G++ R E+ Q LQLDFL K++PNYH L+K
Sbjct: 135 EVIPENTVIYGADCLRRVQTERPQPQTLQLDFLMKILPNYHHLKK 179
>AF433663-1|AAP97314.1| 384|Homo sapiens unknown protein.
Length = 384
Score = 38.7 bits (86), Expect = 0.020
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Frame = -1
Query: 494 EVACKLESIYGHVG--ESNVFE-------CRSFVGEEVKVGSGCVIGAACTLTAPQILAD 342
++ CK+ES++ ++G F CRSF E I A T+ +
Sbjct: 104 QLVCKIESVHSNMGLPTPQTFRPWSLNSNCRSFTEENHMSACHHSISAQ---TSKHLFWA 160
Query: 341 NTVIWGSEHHVREALEKQPSQ---------LLQLDFLSKVMPNYHRLRKPNVHKRQPSRQ 189
N +I SEH ++ A+ Q + L+ SK + + +L+ P+ H PS+
Sbjct: 161 NKLIQASEHSLQRAINMQLNNGSAGQPIRSPLREAIPSKALCSEEQLQIPDAHSAPPSKS 220
Query: 188 SQEPSP 171
SQEPSP
Sbjct: 221 SQEPSP 226
>BX088650-16|CAM26307.1| 487|Homo sapiens synaptic Ras GTPase
activating protein 1 homolog (rat) protein.
Length = 487
Score = 33.9 bits (74), Expect = 0.57
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -1
Query: 278 LLQLDFLSKVMPNYHR-LRKPNVHKRQPSRQSQEPSPKP 165
LL+L L +++ + LR PN+ +RQPSRQS+ P P+P
Sbjct: 66 LLKLGPLPRLLNDISTALRNPNI-QRQPSRQSERPRPQP 103
>BX088650-15|CAM26306.1| 1284|Homo sapiens synaptic Ras GTPase
activating protein 1 homolog (rat) protein.
Length = 1284
Score = 33.9 bits (74), Expect = 0.57
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -1
Query: 278 LLQLDFLSKVMPNYHR-LRKPNVHKRQPSRQSQEPSPKP 165
LL+L L +++ + LR PN+ +RQPSRQS+ P P+P
Sbjct: 649 LLKLGPLPRLLNDISTALRNPNI-QRQPSRQSERPRPQP 686
>BX088650-14|CAM26305.1| 1343|Homo sapiens synaptic Ras GTPase
activating protein 1 homolog (rat) protein.
Length = 1343
Score = 33.9 bits (74), Expect = 0.57
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -1
Query: 278 LLQLDFLSKVMPNYHR-LRKPNVHKRQPSRQSQEPSPKP 165
LL+L L +++ + LR PN+ +RQPSRQS+ P P+P
Sbjct: 708 LLKLGPLPRLLNDISTALRNPNI-QRQPSRQSERPRPQP 745
>BX088650-13|CAM26304.1| 1299|Homo sapiens synaptic Ras GTPase
activating protein 1 homolog (rat) protein.
Length = 1299
Score = 33.9 bits (74), Expect = 0.57
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -1
Query: 278 LLQLDFLSKVMPNYHR-LRKPNVHKRQPSRQSQEPSPKP 165
LL+L L +++ + LR PN+ +RQPSRQS+ P P+P
Sbjct: 708 LLKLGPLPRLLNDISTALRNPNI-QRQPSRQSERPRPQP 745
>AL713634-1|CAD28452.1| 902|Homo sapiens hypothetical protein
protein.
Length = 902
Score = 33.9 bits (74), Expect = 0.57
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -1
Query: 278 LLQLDFLSKVMPNYHR-LRKPNVHKRQPSRQSQEPSPKP 165
LL+L L +++ + LR PN+ +RQPSRQS+ P P+P
Sbjct: 325 LLKLGPLPRLLNDISTALRNPNI-QRQPSRQSERPRPQP 362
>AL662799-16|CAM25573.1| 487|Homo sapiens synaptic Ras GTPase
activating protein 1 homolog (rat) protein.
Length = 487
Score = 33.9 bits (74), Expect = 0.57
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -1
Query: 278 LLQLDFLSKVMPNYHR-LRKPNVHKRQPSRQSQEPSPKP 165
LL+L L +++ + LR PN+ +RQPSRQS+ P P+P
Sbjct: 66 LLKLGPLPRLLNDISTALRNPNI-QRQPSRQSERPRPQP 103
>AL662799-15|CAM25572.1| 1284|Homo sapiens synaptic Ras GTPase
activating protein 1 homolog (rat) protein.
Length = 1284
Score = 33.9 bits (74), Expect = 0.57
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -1
Query: 278 LLQLDFLSKVMPNYHR-LRKPNVHKRQPSRQSQEPSPKP 165
LL+L L +++ + LR PN+ +RQPSRQS+ P P+P
Sbjct: 649 LLKLGPLPRLLNDISTALRNPNI-QRQPSRQSERPRPQP 686
>AL662799-14|CAI18276.2| 1343|Homo sapiens synaptic Ras GTPase
activating protein 1 homolog (rat) protein.
Length = 1343
Score = 33.9 bits (74), Expect = 0.57
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -1
Query: 278 LLQLDFLSKVMPNYHR-LRKPNVHKRQPSRQSQEPSPKP 165
LL+L L +++ + LR PN+ +RQPSRQS+ P P+P
Sbjct: 708 LLKLGPLPRLLNDISTALRNPNI-QRQPSRQSERPRPQP 745
>AB067525-1|BAB67831.2| 1376|Homo sapiens KIAA1938 protein protein.
Length = 1376
Score = 33.9 bits (74), Expect = 0.57
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -1
Query: 278 LLQLDFLSKVMPNYHR-LRKPNVHKRQPSRQSQEPSPKP 165
LL+L L +++ + LR PN+ +RQPSRQS+ P P+P
Sbjct: 741 LLKLGPLPRLLNDISTALRNPNI-QRQPSRQSERPRPQP 778
>BC028124-1|AAH28124.1| 384|Homo sapiens chromosome 17 open reading
frame 46 protein.
Length = 384
Score = 31.5 bits (68), Expect = 3.0
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 18/126 (14%)
Frame = -1
Query: 494 EVACKLESIYGHVG--ESNVF-------ECRSFVGEEVKVGSGCVIGAACTLTAPQILAD 342
++ CK+ES++ ++G F CRSF E I A T+ +
Sbjct: 104 QLVCKIESVHSNMGLPTPQTFRPWSLNSNCRSFTEENHMSACHHSISAQ---TSKHLFWA 160
Query: 341 NTVIWGSEHHVREALEKQ-----PSQLLQLDFLSKVMPN----YHRLRKPNVHKRQPSRQ 189
N +I SEH ++ A+ Q Q ++ + N +L+ P+ H P+
Sbjct: 161 NKLIQASEHSLQRAINMQLNNGSAGQPIRSPLREAIPTNALCSEEQLQIPDAHSAPPTTS 220
Query: 188 SQEPSP 171
SQ PSP
Sbjct: 221 SQAPSP 226
>BC004191-1|AAH04191.1| 182|Homo sapiens dynactin 5 (p25) protein.
Length = 182
Score = 30.7 bits (66), Expect = 5.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 422 VGEEVKVGSGCVIGAACTLTAPQILADNTVI 330
+G V VG CVIG C L + DNTV+
Sbjct: 104 IGSYVHVGKNCVIGRRCVLKDCCKILDNTVL 134
>AK027387-1|BAB55077.1| 182|Homo sapiens protein ( Homo sapiens
cDNA FLJ14481 fis, clone MAMMA1002351, highly similar to
Mus musculus dynactin subunit p25 (p25) mRNA. ).
Length = 182
Score = 30.7 bits (66), Expect = 5.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 422 VGEEVKVGSGCVIGAACTLTAPQILADNTVI 330
+G V VG CVIG C L + DNTV+
Sbjct: 104 IGSYVHVGKNCVIGRRCVLKDCCKILDNTVL 134
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,286,588
Number of Sequences: 237096
Number of extensions: 1762287
Number of successful extensions: 3641
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3634
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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