Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_J06
(704 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024810-6|AAF60762.2| 180|Caenorhabditis elegans Hypothetical ... 65 5e-11
Z96047-10|CAH04703.1| 195|Caenorhabditis elegans Hypothetical p... 34 0.086
Z80215-19|CAH19104.1| 195|Caenorhabditis elegans Hypothetical p... 34 0.086
U28943-17|AAK68292.2| 811|Caenorhabditis elegans Clc-type chlo... 32 0.46
U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type chlo... 32 0.46
AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo... 32 0.46
AF173172-1|AAF13165.1| 811|Caenorhabditis elegans CLC chloride ... 32 0.46
Z81525-3|CAB04258.1| 467|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z49907-11|CAF31469.1| 844|Caenorhabditis elegans Hypothetical p... 28 5.7
Z49907-10|CAC42250.1| 875|Caenorhabditis elegans Hypothetical p... 28 5.7
Z49907-9|CAA90092.1| 880|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z48367-8|CAF31471.1| 844|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z48367-7|CAC42266.1| 875|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z48367-6|CAA88325.1| 880|Caenorhabditis elegans Hypothetical pr... 28 5.7
AF319613-1|AAG49523.1| 880|Caenorhabditis elegans CLC-type chlo... 28 5.7
AF173171-1|AAF13164.1| 844|Caenorhabditis elegans CLC chloride ... 28 5.7
>AC024810-6|AAF60762.2| 180|Caenorhabditis elegans Hypothetical
protein Y54E10A.5 protein.
Length = 180
Score = 64.9 bits (151), Expect = 5e-11
Identities = 43/158 (27%), Positives = 72/158 (45%)
Frame = -1
Query: 701 VCEDCTLEGDITIGGGTVIHPRVSXXXXXXXXXXXXXXXXXXYSTIIHKKSDKQENPPKP 522
VC + ++G++ I G V+HP V Y+ +I SD Q P
Sbjct: 15 VCVEADIKGEVIIKEGCVVHPFVVFDATKGPIYVGENNIFEEYA-VIRNNSDGQ-----P 68
Query: 521 LFIGAHNVFEVACKLESIYGHVGESNVFECRSFVGEEVKVGSGCVIGAACTLTAPQILAD 342
+ IG N+F+V K + Y VG NV + + + V C +GA CT+ + Q L
Sbjct: 69 MIIGDWNIFQVHSKSSAKY--VGSRNVIGVHAVLEDGCSVSDDCSVGAKCTVFSHQNLEP 126
Query: 341 NTVIWGSEHHVREALEKQPSQLLQLDFLSKVMPNYHRL 228
+ ++ + + R + Q++FL K++P+YH L
Sbjct: 127 SVSVYAATNLSRTTKTPNMTSPHQIEFLRKILPSYHHL 164
>Z96047-10|CAH04703.1| 195|Caenorhabditis elegans Hypothetical
protein DY3.8 protein.
Length = 195
Score = 34.3 bits (75), Expect = 0.086
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 516 KQWLWGILLFITLFMYYSRIFFNNTVFSNYNRSAFSYNADSRM 644
K+W+WG LL+++ M+Y +F TV ++R + N S M
Sbjct: 89 KKWVWGGLLYLSNIMFYV-LFMGLTVMGQFSRYHYDKNRVSNM 130
>Z80215-19|CAH19104.1| 195|Caenorhabditis elegans Hypothetical
protein DY3.8 protein.
Length = 195
Score = 34.3 bits (75), Expect = 0.086
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 516 KQWLWGILLFITLFMYYSRIFFNNTVFSNYNRSAFSYNADSRM 644
K+W+WG LL+++ M+Y +F TV ++R + N S M
Sbjct: 89 KKWVWGGLLYLSNIMFYV-LFMGLTVMGQFSRYHYDKNRVSNM 130
>U28943-17|AAK68292.2| 811|Caenorhabditis elegans Clc-type
chloride channel protein3, isoform b protein.
Length = 811
Score = 31.9 bits (69), Expect = 0.46
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 506 HNVFEVACKLESIYGHVGESNVFECRSFVGEEVKVGSGCVIGAACTLTAP 357
H VA +L + H +FE S GE + +GC +G ACT +AP
Sbjct: 243 HVASVVASQLTRLV-HGSSGGIFENESRSGE--MLAAGCAVGVACTFSAP 289
>U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type
chloride channel protein3, isoform a protein.
Length = 1001
Score = 31.9 bits (69), Expect = 0.46
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 506 HNVFEVACKLESIYGHVGESNVFECRSFVGEEVKVGSGCVIGAACTLTAP 357
H VA +L + H +FE S GE + +GC +G ACT +AP
Sbjct: 172 HVASVVASQLTRLV-HGSSGGIFENESRSGE--MLAAGCAVGVACTFSAP 218
>AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type
chloride channel CLH-3b protein.
Length = 1001
Score = 31.9 bits (69), Expect = 0.46
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 506 HNVFEVACKLESIYGHVGESNVFECRSFVGEEVKVGSGCVIGAACTLTAP 357
H VA +L + H +FE S GE + +GC +G ACT +AP
Sbjct: 172 HVASVVASQLTRLV-HGSSGGIFENESRSGE--MLAAGCAVGVACTFSAP 218
>AF173172-1|AAF13165.1| 811|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 811
Score = 31.9 bits (69), Expect = 0.46
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 506 HNVFEVACKLESIYGHVGESNVFECRSFVGEEVKVGSGCVIGAACTLTAP 357
H VA +L + H +FE S GE + +GC +G ACT +AP
Sbjct: 243 HVASVVASQLTRLV-HGSSGGIFENESRSGE--MLAAGCAVGVACTFSAP 289
>Z81525-3|CAB04258.1| 467|Caenorhabditis elegans Hypothetical
protein F33A8.4 protein.
Length = 467
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 27 CLRNMRIFTNMNGMQPKNSLNLIRYSKRINIYF 125
C+ RIF N+ + P+ ++ L+ Y KR +F
Sbjct: 238 CIGAPRIFENIRALHPEKNVFLLDYDKRFAKFF 270
>Z49907-11|CAF31469.1| 844|Caenorhabditis elegans Hypothetical
protein B0491.8c protein.
Length = 844
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -1
Query: 419 GEEVKV-GSGCVIGAACTLTAP 357
G E+++ SGC +G ACT +AP
Sbjct: 199 GREMEMLSSGCAVGIACTFSAP 220
>Z49907-10|CAC42250.1| 875|Caenorhabditis elegans Hypothetical
protein B0491.8b protein.
Length = 875
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -1
Query: 419 GEEVKV-GSGCVIGAACTLTAP 357
G E+++ SGC +G ACT +AP
Sbjct: 230 GREMEMLSSGCAVGIACTFSAP 251
>Z49907-9|CAA90092.1| 880|Caenorhabditis elegans Hypothetical
protein B0491.8a protein.
Length = 880
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -1
Query: 419 GEEVKV-GSGCVIGAACTLTAP 357
G E+++ SGC +G ACT +AP
Sbjct: 230 GREMEMLSSGCAVGIACTFSAP 251
>Z48367-8|CAF31471.1| 844|Caenorhabditis elegans Hypothetical
protein B0491.8c protein.
Length = 844
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -1
Query: 419 GEEVKV-GSGCVIGAACTLTAP 357
G E+++ SGC +G ACT +AP
Sbjct: 199 GREMEMLSSGCAVGIACTFSAP 220
>Z48367-7|CAC42266.1| 875|Caenorhabditis elegans Hypothetical
protein B0491.8b protein.
Length = 875
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -1
Query: 419 GEEVKV-GSGCVIGAACTLTAP 357
G E+++ SGC +G ACT +AP
Sbjct: 230 GREMEMLSSGCAVGIACTFSAP 251
>Z48367-6|CAA88325.1| 880|Caenorhabditis elegans Hypothetical
protein B0491.8a protein.
Length = 880
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -1
Query: 419 GEEVKV-GSGCVIGAACTLTAP 357
G E+++ SGC +G ACT +AP
Sbjct: 230 GREMEMLSSGCAVGIACTFSAP 251
>AF319613-1|AAG49523.1| 880|Caenorhabditis elegans CLC-type
chloride channel CLH-2b protein.
Length = 880
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -1
Query: 419 GEEVKV-GSGCVIGAACTLTAP 357
G E+++ SGC +G ACT +AP
Sbjct: 230 GREMEMLSSGCAVGIACTFSAP 251
>AF173171-1|AAF13164.1| 844|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 844
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -1
Query: 419 GEEVKV-GSGCVIGAACTLTAP 357
G E+++ SGC +G ACT +AP
Sbjct: 199 GREMEMLSSGCAVGIACTFSAP 220
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,799,938
Number of Sequences: 27780
Number of extensions: 298969
Number of successful extensions: 880
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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