Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_J05
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110484-27|CAI46626.1|  397|Caenorhabditis elegans Hypothetical...    30   1.5  
Z81073-1|CAB03029.1|  645|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF016450-11|AAB65981.1|  317|Caenorhabditis elegans Hypothetical...    28   6.2  
Z66514-6|CAA91345.3|  337|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z46996-10|CAL22702.1|  337|Caenorhabditis elegans Hypothetical p...    27   8.2  

>AL110484-27|CAI46626.1|  397|Caenorhabditis elegans Hypothetical
           protein Y38E10A.28 protein.
          Length = 397

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 464 SNARGRAKPLPTA*YSPLIFFKYTSLIYMYRCIFIRSL 577
           +N+R +A P+ T  Y   + F +   +Y YR  +IRS+
Sbjct: 33  NNSRFKALPILTVFYCQTVCFGWAGFVYNYRRWYIRSI 70


>Z81073-1|CAB03029.1|  645|Caenorhabditis elegans Hypothetical
           protein F30F8.1 protein.
          Length = 645

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 121 MNDQFSKFITEINHISRKLFLHCDRYL 201
           MND ++++I ++N  +R   ++  RYL
Sbjct: 1   MNDSYAEYIAQVNEFTRNFCMNPQRYL 27


>AF016450-11|AAB65981.1|  317|Caenorhabditis elegans Hypothetical
           protein B0238.11 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 603 IV*YTRCPDNERMKIHLYIYIKEVYLKKISGE 508
           +V Y   PD    KI LYI   ++ LK I GE
Sbjct: 156 LVEYKSMPDRPPTKIQLYIKKHQIMLKGIGGE 187


>Z66514-6|CAA91345.3|  337|Caenorhabditis elegans Hypothetical
           protein K01A11.3 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 284 KIQKKGDFCFISIYIKFYNIKVCDKHFSK 198
           K+Q  G+ CF+++ I+      C +HF +
Sbjct: 75  KLQNPGNSCFLNVAIQMMQKAGCGRHFKR 103


>Z46996-10|CAL22702.1|  337|Caenorhabditis elegans Hypothetical
           protein K01A11.3 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 284 KIQKKGDFCFISIYIKFYNIKVCDKHFSK 198
           K+Q  G+ CF+++ I+      C +HF +
Sbjct: 75  KLQNPGNSCFLNVAIQMMQKAGCGRHFKR 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,129,873
Number of Sequences: 27780
Number of extensions: 259715
Number of successful extensions: 598
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)