Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_J04
(883 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 245 4e-65
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 204 1e-52
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 134 7e-32
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 132 5e-31
01_06_1505 + 37827495-37827977,37828424-37828914,37828997-37829819 31 0.93
03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112 30 2.1
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 29 6.5
04_04_0792 - 28091597-28091675,28091853-28091908,28092151-280922... 29 6.5
02_01_0725 - 5422477-5422641,5422721-5422792,5422876-5422958,542... 29 6.5
12_02_0279 - 16704284-16704925 28 8.6
07_03_1412 - 26392239-26392826 28 8.6
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 245 bits (599), Expect = 4e-65
Identities = 133/277 (48%), Positives = 172/277 (62%), Gaps = 3/277 (1%)
Frame = -3
Query: 875 GPSTCRQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGXQTGAQDIILAGGMESMSNV 696
G + RQA + AG+P + +C+ VNKVCASGMK+ M AAQ G DI++AGGMESMSN
Sbjct: 69 GQAPARQAALGAGIPNTVVCSAVNKVCASGMKATMFAAQSILLGINDIVVAGGMESMSNA 128
Query: 695 PFYLK--RGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVN 522
P Y+ R + +G LVDG++ DGL DVY F MGNCAE A +TR+DQD YA+
Sbjct: 129 PKYIAEARKGSRFGHDTLVDGMLKDGLWDVYGDFAMGNCAELCADNHALTREDQDAYAIQ 188
Query: 521 SYKRSAAAYEAKAFVDELVPVPVPQKRGAP-VIFAEDEEYKRVNFEKFTKLSTVFQKENG 345
S +R AA + AF E+VP+ VP RG P V+ +DE + + K KL F++ G
Sbjct: 189 SNERGIAARNSGAFAWEIVPIEVPVGRGKPPVLVDKDEGLDKFDPVKLKKLRPSFKENGG 248
Query: 344 TVTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDPIDFPIAPAVAIPKL 165
TVTAGNAS+++DG A+ L ++ IARI GFAD P F +PA+AIPK
Sbjct: 249 TVTAGNASSISDGAAALVLVSGQKAQELGLQVIARIKGFADAAQAPELFTTSPALAIPKA 308
Query: 164 LEKTGVRKEDVALWEINEAFSVVAVANQKLLGLDPSK 54
L G+ V +EINEAFS VA+ANQKLLG+ K
Sbjct: 309 LANAGLESSRVDYYEINEAFSAVALANQKLLGIPSEK 345
Score = 35.5 bits (78), Expect = 0.057
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = -1
Query: 58 QKINVHGGAVSLGHP 14
+KINVHGGAVSLGHP
Sbjct: 344 EKINVHGGAVSLGHP 358
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 204 bits (497), Expect = 1e-52
Identities = 118/276 (42%), Positives = 162/276 (58%), Gaps = 2/276 (0%)
Frame = -3
Query: 875 GPSTCRQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGXQTGAQDIILAGGMESMSNV 696
G + RQA + AGLP + CTTVNKVC+SGMK++MLAAQ Q G D+++AGGMESMSN
Sbjct: 75 GQAPARQAALGAGLPDTVPCTTVNKVCSSGMKAVMLAAQTIQLGMHDVVVAGGMESMSNA 134
Query: 695 PFYL--KRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVN 522
P Y+ R + +G L+DG++ DGL DVYN F MG CAE A + I+R++QD YA+
Sbjct: 135 PKYVAAARRGSRFGHDVLIDGMLKDGLWDVYNDFPMGMCAELCADQHSISREEQDLYAIQ 194
Query: 521 SYKRSAAAYEAKAFVDELVPVPVPQKRGAPVIFAEDEEYKRVNFEKFTKLSTVFQKENGT 342
S +R+ AA ++ F E+ PV + RG P + + +E + K T L +
Sbjct: 195 SNERAIAARDSGTFSWEIAPVEISSGRGKPPLIVDKDE----SLAKCTSLPSRLP----- 245
Query: 341 VTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDPIDFPIAPAVAIPKLL 162
+ +DG AK L ++ IARI G+AD P F PA+AIPK +
Sbjct: 246 -----SKIRSDGAAAIVLVSGQKAKSLGLQVIARIRGYADAAQAPELFTTTPALAIPKAV 300
Query: 161 EKTGVRKEDVALWEINEAFSVVAVANQKLLGLDPSK 54
G++ + +EINEAFSVVA+ANQKLLG+ K
Sbjct: 301 SNAGLQTSQIDYYEINEAFSVVALANQKLLGIPSGK 336
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 134 bits (325), Expect = 7e-32
Identities = 95/276 (34%), Positives = 139/276 (50%), Gaps = 6/276 (2%)
Frame = -3
Query: 863 CRQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGXQTGAQDIILAGGMESMSNVPFYL 684
CR A +AG P + TVN+ C+SG++++ A + G DI +A G+ESM+
Sbjct: 115 CRMAAFYAGFPDTVPLMTVNRQCSSGLQAVANVASNIKAGLYDIGIAAGLESMTV----- 169
Query: 683 KRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRSA 504
+ G +F D MG +EN AK+ ITR +QD+ AV S++++A
Sbjct: 170 --NQVRLDGQVNPKVELFSQARDCL--LPMGLTSENVAKRFGITRMEQDQAAVESHRKAA 225
Query: 503 AAYEAKAFVDELVPVP---VPQKRGAP---VIFAEDEEYKRVNFEKFTKLSTVFQKENGT 342
AA + F +E+VPV V K G V+ A+D + +KL F K+ GT
Sbjct: 226 AAAASGKFKEEIVPVHTKIVDPKTGEEKEIVVSADDGIRPGTSLAVLSKLKPAFSKD-GT 284
Query: 341 VTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDPIDFPIAPAVAIPKLL 162
TAGNAS ++DG A + + + FA DP + PAVAIP +
Sbjct: 285 TTAGNASQVSDGAGAVLLMRRDIAMQKGLPIVGVFRSFAAVGVDPAIMGVGPAVAIPAAV 344
Query: 161 EKTGVRKEDVALWEINEAFSVVAVANQKLLGLDPSK 54
+ G++ +DV L+EINEAF+ V K LGLDP+K
Sbjct: 345 KAAGLQIDDVDLFEINEAFASQYVYCCKKLGLDPAK 380
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/14 (71%), Positives = 14/14 (100%)
Frame = -1
Query: 55 KINVHGGAVSLGHP 14
K+NV+GGA++LGHP
Sbjct: 380 KVNVNGGAMALGHP 393
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 132 bits (318), Expect = 5e-31
Identities = 94/277 (33%), Positives = 138/277 (49%), Gaps = 7/277 (2%)
Frame = -3
Query: 863 CRQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGXQTGAQDIILAGGMESMS-NVPFY 687
CR A +AG+P++ TVN+ C+SG++++ A + G DI + G+ESMS N +
Sbjct: 113 CRAAAFYAGVPENVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMSVNAMGW 172
Query: 686 LKRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRS 507
+ +Q + MG +EN A + +TRQ+QD+ A S++R+
Sbjct: 173 EGQVNPKVNEVQKAQDCLLP----------MGITSENVAHRYGVTRQEQDQAAAESHRRA 222
Query: 506 AAAYEAKAFVDELVPVP---VPQKRGAP---VIFAEDEEYKRVNFEKFTKLSTVFQKENG 345
AAA A F DE+VPVP V K G VI +D KL VF+K+ G
Sbjct: 223 AAATAAGKFKDEIVPVPTKIVDPKTGEEKKVVISVDDGIRPGTTASGLAKLKPVFRKD-G 281
Query: 344 TVTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDPIDFPIAPAVAIPKL 165
T TAGN+S ++DG A + + + FA DP + PAVAIP
Sbjct: 282 TTTAGNSSQVSDGAGAVLLMRRDVAMKKGLPILGVFRSFAAVGVDPAVMGVGPAVAIPAA 341
Query: 164 LEKTGVRKEDVALWEINEAFSVVAVANQKLLGLDPSK 54
++ G++ ED+ L+E+NEAF+ V LGLD SK
Sbjct: 342 VKSAGLQIEDIDLFELNEAFASQFVYCCNKLGLDRSK 378
Score = 29.9 bits (64), Expect = 2.8
Identities = 10/14 (71%), Positives = 14/14 (100%)
Frame = -1
Query: 55 KINVHGGAVSLGHP 14
K+NV+GGA++LGHP
Sbjct: 378 KVNVNGGAIALGHP 391
>01_06_1505 + 37827495-37827977,37828424-37828914,37828997-37829819
Length = 598
Score = 31.5 bits (68), Expect = 0.93
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = +1
Query: 211 SHSPSANPTIRAIGL----TFNLLAASAVINTKA--AAPSFNVEALPAVTVPFSFWNTVD 372
S +P T++ IG+ + L+ SA++ T+ A F + P T+P SFW V
Sbjct: 429 SKNPRGITTLQRIGIGLIISVILMVVSALVETRRLMVARDFGLVDNPEATIPMSFWWVVP 488
Query: 373 NFV 381
F+
Sbjct: 489 QFI 491
>03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112
Length = 1372
Score = 30.3 bits (65), Expect = 2.1
Identities = 22/79 (27%), Positives = 37/79 (46%)
Frame = +1
Query: 100 TLKASFISHNATSSFLTPVFSNNLGMATAGAIGKSMGSHSPSANPTIRAIGLTFNLLAAS 279
T + + N+T L V NLG ++AG +G S + ++ + G NL +
Sbjct: 1172 TQSGAELDANSTVEVLGEVLGTNLGASSAGNLGVS----AIRSDERVGLAGDARNLRLGT 1227
Query: 280 AVINTKAAAPSFNVEALPA 336
++ N + + S VE LPA
Sbjct: 1228 SMPNLSSDSASAQVEVLPA 1246
>06_03_1490 +
30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 28.7 bits (61), Expect = 6.5
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Frame = +1
Query: 133 TSSFLTPVFSNNLGMATAGAIGKSM------GSHSPSANPTIRAIGLTFNLLAASAVIN- 291
TS T S + +ATAG +S GSH+P++ +++A NLL++ N
Sbjct: 202 TSQTPTRGVSPQVNLATAGIPTQSSTPIAGYGSHTPASTTSVKANSADLNLLSSPPAAND 261
Query: 292 TKAAAPSFN 318
+KA P N
Sbjct: 262 SKALVPLGN 270
>04_04_0792 -
28091597-28091675,28091853-28091908,28092151-28092211,
28092290-28092363,28092865-28092945,28093127-28093201,
28093276-28093395,28093486-28093566,28093644-28093712,
28094057-28094128,28094220-28094362,28094452-28094566,
28094651-28094774,28095124-28095476,28096035-28096374,
28096914-28097124,28097209-28097482,28097570-28097788,
28097868-28098004,28098117-28098375
Length = 980
Score = 28.7 bits (61), Expect = 6.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 744 SPRYNTCWWDGIYVKCTFLF 685
S Y+ CWW + V+C F F
Sbjct: 470 SDLYDRCWWPPVCVRCIFRF 489
>02_01_0725 -
5422477-5422641,5422721-5422792,5422876-5422958,
5423113-5423173,5423305-5423381,5423456-5423522,
5423770-5423803,5423894-5423974,5424285-5424436,
5424529-5424615,5425019-5425126,5425906-5426259
Length = 446
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3
Query: 797 CASGMKSIMLAAQGXQTGAQDIILAGGMES 708
CA+G SI A + Q G D+++AGG ES
Sbjct: 193 CATGAHSIGDATRMIQFGDADVMVAGGTES 222
>12_02_0279 - 16704284-16704925
Length = 213
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 825 YHMYNCKQSMCLWH 784
YH Y CK MCLWH
Sbjct: 201 YHKY-CKSRMCLWH 213
>07_03_1412 - 26392239-26392826
Length = 195
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 197 PIAPAVAIPKLLEKTGVRKEDVALWEINEAFS 102
P+ A+P LE+T VR + V L+ EAF+
Sbjct: 88 PMTEGRALPPSLEETAVRAQGVYLYNSKEAFN 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,220,139
Number of Sequences: 37544
Number of extensions: 439727
Number of successful extensions: 1154
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -