Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_J03
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr...    64   3e-11
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    27   2.5  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    27   3.3  
SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.3  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   5.8  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   7.7  
SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos...    26   7.7  

>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 50/182 (27%), Positives = 82/182 (45%)
 Frame = -1

Query: 811 KKLVLIEKDPRFLPSLELLADACRDKVDVDIITGDILKTDLSQFIPNDAKVHWLDPPPPV 632
           +K++ +E DPR    +         +  + ++ GD++KTDL  F   D            
Sbjct: 73  RKVIAVEMDPRMAAEITKRVQGTPKEKKLQVVLGDVIKTDLPYF---DV----------- 118

Query: 631 HLIGNLPFSVSTILIIRWLEMISKHEGPWLFGRTRMTLTFQKEVAERMAARILDKQRCRL 452
             + N P+ +S+ L+ + L+   +   P         L FQ+E A R+ AR  D   CRL
Sbjct: 119 -CVSNTPYQISSPLVFKLLQ---QRPAP-----RAAILMFQREFALRLVARPGDPLYCRL 169

Query: 451 SVMCQSWCTVKYNFDIPGTAFLPKPDVDVGVVTLTPLKHPIIKLPFKLAEKVVRQIFSMR 272
           S   Q W  VK+   +    F P P V+  VV + P K+P   L F+  + ++R +F  +
Sbjct: 170 SANVQMWAHVKHIMKVGKNNFRPPPLVESSVVRIEP-KNPPPPLAFEEWDGLLRIVFLRK 228

Query: 271 QK 266
            K
Sbjct: 229 NK 230


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 702 KISPVIMSTSTLSRQASAKSSNDGKNRGSFSIKTSFL 812
           K+SP I+    +    SA+SS+  ++  S  IKT FL
Sbjct: 549 KLSPSIIFVDEIDSLLSARSSDGNEHETSRRIKTEFL 585


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 139 ARLCEAYNDIIKQHPEFEHYDYRAPKNKTNLINA 38
           A+L  + + II + P+F  YD RA +  T+ + A
Sbjct: 462 AQLSSSLDSIISRPPKFVEYDLRAIRGSTDKVAA 495


>SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 367 VGVVTLTPLKHPIIKLPFKLAEKVV 293
           V +V LTPL HP++ +P+  A KVV
Sbjct: 95  VYLVILTPLPHPML-IPYLFAPKVV 118


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 343 LKHPIIKLPFKLAEKVVRQIFSMRQKY 263
           L+HP++K  FK    + R+I +M ++Y
Sbjct: 442 LQHPLVKEQFKRFAHMQREIVAMSEQY 468


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 482 GSHSLCNFFLKSKSHSCSPKQ 544
           GSH   N++  S S SC P+Q
Sbjct: 142 GSHGYFNYYGASSSRSCIPQQ 162


>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
           Coq4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
 Frame = -1

Query: 775 LPSLELLADACRDKVDVDIITGDILKTDL---SQFI--PNDAKV--HWLDPPPPVHLIGN 617
           LP L  L      K+ VD I  + +  D    ++F+  P +A V   + +     H I N
Sbjct: 123 LPFLRTLPPNTLGKIYVDWIDKEHVGPDTRSPTRFVDDPEEAYVMQRYRESHDFYHAICN 182

Query: 616 LPFSVSTILIIRWLEMIS 563
           +P ++   L I+WLE ++
Sbjct: 183 MPTNIEGELAIKWLEFVN 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,623,044
Number of Sequences: 5004
Number of extensions: 80782
Number of successful extensions: 209
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)