Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_J03
(844 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0175 - 1198657-1198737,1199080-1199190,1199488-1199540,120... 33 0.22
03_01_0006 + 65675-65808,66385-66457,68290-68526,68648-68785,688... 32 0.50
01_06_1417 - 37189068-37190321 30 2.7
02_05_0999 + 33405982-33408279,33408356-33408466,33408551-334087... 29 4.6
11_06_0097 + 20062385-20062745,20063374-20063613,20063831-200641... 29 6.1
03_05_0527 + 25220375-25221425,25221513-25222182,25222347-252224... 29 6.1
07_03_0536 - 19205515-19205686,19205807-19205931,19206428-192065... 28 8.1
04_01_0072 - 784922-785567,785673-786406 28 8.1
>02_01_0175 -
1198657-1198737,1199080-1199190,1199488-1199540,
1200131-1200215,1200519-1200614,1200729-1200821,
1201640-1201696,1201826-1201975,1202819-1202893
Length = 266
Score = 33.5 bits (73), Expect = 0.22
Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 3/146 (2%)
Frame = -1
Query: 796 IEKDPRFLPSLELLADACRDKVDVDIITGDILKTDL-SQFIPN-DAKVHWLDPPPPVHLI 623
+EKD L+ D + II DI K ++ S F+P + K H V +
Sbjct: 73 VEKDKHMAT---LVNDRFGSTEQLKIIEEDITKFNVRSHFLPFLEEKSHHTRKYAKV--V 127
Query: 622 GNLPFSVSTILIIRWLEMISKHEGPWLFGRTRMTLTFQKEVAERMA-ARILDKQRCRLSV 446
NLPF+VST ++ L M +F + M L Q E A R A A I + ++V
Sbjct: 128 SNLPFNVSTEVVKLLLPMGD------VF--SVMVLLLQDETALRFADASIQTPEYRPINV 179
Query: 445 MCQSWCTVKYNFDIPGTAFLPKPDVD 368
+ +Y F + T F P+P V+
Sbjct: 180 FVNFYSEPEYKFKVERTNFFPQPKVN 205
>03_01_0006 +
65675-65808,66385-66457,68290-68526,68648-68785,
68871-69005,69131-69310,69495-69701,69821-69943,
70240-70359,70758-70880,72067-72171,72254-72398,
73443-73607,73669-73907,74452-74484,74977-75058,
75200-75360,75739-75951,76789-76971,77051-77220,
77375-77474
Length = 1021
Score = 32.3 bits (70), Expect = 0.50
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 781 RFLPSLELLADACRDKVDVDIIT-GDILKTDLSQFIPNDAKVHWLDP 644
R P ++L D D++D ++ GDI+ L IP DA++ DP
Sbjct: 188 RLAPKAKVLRDGTWDELDASLLVPGDIISVKLGDIIPADARLLEGDP 234
>01_06_1417 - 37189068-37190321
Length = 417
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1
Query: 628 LIGNLPFSVSTILIIRWLEMISKHEGPWLFG 536
L G+ P ++L + W +IS+H GPW+FG
Sbjct: 335 LQGSSPLDNVSVLELGWT-VISEHFGPWVFG 364
>02_05_0999 +
33405982-33408279,33408356-33408466,33408551-33408703,
33408870-33409033,33409113-33409210,33409296-33409474,
33409588-33409675,33410285-33410451
Length = 1085
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = -1
Query: 178 PVTRPFQITNMEFARLCEAYNDIIKQHPEFEHYDYRAPKNKTNLI 44
P++ FQ+ +F +D ++ P++ HY+ +P++ NL+
Sbjct: 228 PISPRFQVGAEDFDERIP--DDFVRHSPKYRHYEVHSPQHVDNLV 270
>11_06_0097 +
20062385-20062745,20063374-20063613,20063831-20064102,
20064304-20064315
Length = 294
Score = 28.7 bits (61), Expect = 6.1
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -1
Query: 631 HLIGNLPFSVSTILIIRWLEM 569
HLIG++P +ST+ + WL++
Sbjct: 25 HLIGHVPLEISTLTKLAWLDL 45
>03_05_0527 +
25220375-25221425,25221513-25222182,25222347-25222440,
25222688-25222870
Length = 665
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = -1
Query: 397 TAFLPKPDVDVGVVTLTPLKHPIIKLPFKLAEKVVRQIFSMRQKYSIRGAQTLFPE 230
T PK +++ + L P PI K P+K+A + ++ ++ +G+Q++F +
Sbjct: 527 TTMPPKREIEFQI-DLAPGTAPIYKKPYKIAANELAEVKKQVEEQLQKGSQSVFQD 581
>07_03_0536 -
19205515-19205686,19205807-19205931,19206428-19206554,
19206653-19206777,19207616-19207708,19207779-19208052,
19208138-19208269,19208391-19208470,19209049-19209117,
19209227-19209343,19209416-19209484,19209839-19209892,
19210012-19210049,19211243-19211354,19211497-19211619,
19211728-19211755,19212048-19212104,19212984-19213028,
19213340-19213361,19213817-19213844,19214338-19214418
Length = 656
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -1
Query: 325 KLPFKLAEKVVRQIFSMRQKYSIRGAQTLFPEEVREEVALKMYNIADID 179
K F EKV + IF +G F +E+ +EVA+K+ ++ + +
Sbjct: 31 KFVFSGVEKVAKLIFDFSNIKKSKGYSRGFDKELHKEVAIKVIDLEEAE 79
>04_01_0072 - 784922-785567,785673-786406
Length = 459
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 502 VAERMAARILDKQRCRLSVMCQSWCTVKYNFDIPGTAFLPKP 377
+ R+A R L RC +C++WCT+ ++ LP+P
Sbjct: 13 IIHRLAPRYLAISRC----VCKTWCTIIEAHNLLHVDLLPRP 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,799,368
Number of Sequences: 37544
Number of extensions: 496398
Number of successful extensions: 1299
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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