Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_J02
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...   152   5e-38
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...    99   6e-22
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    52   7e-08
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo...    33   0.058
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    27   2.2  
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   8.8  

>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score =  152 bits (369), Expect = 5e-38
 Identities = 70/84 (83%), Positives = 75/84 (89%)
 Frame = -3

Query: 755 DRXRIGEAREELMRMLSEDEXRDAVLLIFANXQDLPNAMNAAEITDKLGLHSLRNRNWYI 576
           DR RI EA EEL RML+EDE RDA+LL+FAN QDLPNAMNAAEITDKLGLHSLR+R WYI
Sbjct: 96  DRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYI 155

Query: 575 QATCATSGDGLYEGLDWLSNQLKN 504
           QATCATSGDGLYEGL+WLS  LKN
Sbjct: 156 QATCATSGDGLYEGLEWLSTNLKN 179


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 99.1 bits (236), Expect = 6e-22
 Identities = 46/83 (55%), Positives = 59/83 (71%)
 Frame = -3

Query: 755 DRXRIGEAREELMRMLSEDEXRDAVLLIFANXQDLPNAMNAAEITDKLGLHSLRNRNWYI 576
           D  RI EAR+EL R++S+ E RD +LL+ AN QDLP A++ A+ITD L L  L++R W +
Sbjct: 100 DSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQLDKLKDRLWNV 159

Query: 575 QATCATSGDGLYEGLDWLSNQLK 507
           Q TCA +GDGL EGL WLS   K
Sbjct: 160 QPTCALTGDGLLEGLAWLSQNAK 182


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 52.4 bits (120), Expect = 7e-08
 Identities = 24/83 (28%), Positives = 45/83 (54%)
 Frame = -3

Query: 755 DRXRIGEAREELMRMLSEDEXRDAVLLIFANXQDLPNAMNAAEITDKLGLHSLRNRNWYI 576
           D  R+ E R  L  +L E++     +L+ AN  D+  A+++ EI+  L +   ++ +W I
Sbjct: 95  DDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYKSSHWRI 154

Query: 575 QATCATSGDGLYEGLDWLSNQLK 507
            +  A +G  + + + WL+N LK
Sbjct: 155 FSVSALTGLNIKDAISWLANDLK 177


>SPBC31F10.06c |sar1||ADP-ribosylation factor
           Sar1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 190

 Score = 32.7 bits (71), Expect = 0.058
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -3

Query: 755 DRXRIGEAREELMRMLSEDEXRDAVLLIFANXQDLPNAMNAAEITDKLGLH 603
           D  R+ E++ EL  +L+ +E      LI  N  D P A++  E+   LGL+
Sbjct: 99  DFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAISEDELKAALGLY 149


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 299 LKYCFSKYYINYVYLNAINGMQINSVQ 219
           L YC   Y+INY+  ++IN   ++ +Q
Sbjct: 33  LSYCCVSYFINYLDRSSINNAYLSGMQ 59


>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 127

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 535 PSYSPSPEVAHVAWMYQL 588
           P+ SP PEV+H  W+  L
Sbjct: 16  PNSSPDPEVSHKLWVSSL 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,411
Number of Sequences: 5004
Number of extensions: 62651
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)