Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_J01
(847 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0008 - 9533424-9533475,9533526-9535344,9535599-9536364,955... 27 0.84
04_01_0197 + 2323790-2324098,2324145-2324774 27 0.91
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 29 3.5
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 29 4.7
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 4.7
02_03_0085 + 15063444-15063889,15064324-15065311 29 4.7
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225 29 4.7
09_02_0327 - 7284829-7284889,7284946-7286126 25 5.5
09_02_0236 - 6131072-6131639,6132047-6132180 29 6.2
06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089 29 6.2
03_01_0210 + 1652040-1652186,1652446-1652853 29 6.2
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 25 6.7
08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671 28 8.1
02_01_0763 - 5665010-5665202,5665285-5665375,5665460-5666245,566... 28 8.1
02_01_0562 + 4129852-4130235,4130355-4130453,4131046-4131146,413... 28 8.1
08_02_1204 - 25267546-25268219,25268319-25268452,25269567-252696... 24 9.2
03_05_0777 + 27636342-27637115 25 9.7
>10_06_0008 -
9533424-9533475,9533526-9535344,9535599-9536364,
9551969-9552097
Length = 921
Score = 27.5 bits (58), Expect(2) = 0.84
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 120 EHSRYNERGLAPPPNPPP 173
E S +N +G PPP PPP
Sbjct: 328 EGSNHNHQGNPPPPPPPP 345
Score = 22.6 bits (46), Expect(2) = 0.84
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 153 PPPNPPPD 176
PPP PPPD
Sbjct: 344 PPPPPPPD 351
>04_01_0197 + 2323790-2324098,2324145-2324774
Length = 312
Score = 27.5 bits (58), Expect(2) = 0.91
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 120 EHSRYNERGLAPPPNPPP 173
E S +N +G PPP PPP
Sbjct: 17 EGSNHNHQGNPPPPPPPP 34
Score = 22.6 bits (46), Expect(2) = 0.91
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 153 PPPNPPPD 176
PPP PPPD
Sbjct: 35 PPPPPPPD 42
>04_04_1630 -
34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +3
Query: 126 SRYNERGLAPPPNPPPDEGVAGSGKTRTEYCDNVI 230
S Y R L PP PPP V SGK T V+
Sbjct: 318 SDYVRRRLLEPPRPPPPAAVNPSGKAYTPLEQQVV 352
>08_01_0600 -
5262573-5262773,5262850-5262952,5263050-5263180,
5263263-5263312,5265266-5265725,5266349-5266708
Length = 434
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 147 LAPPPNPPPDEGVAGSG 197
+APPP PPP GVAG G
Sbjct: 1 MAPPP-PPPQAGVAGGG 16
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 159 PNPPPDEGVAGSGKTRTEYCDNVISPDAFTFNPRQKIIITRTKH 290
P PP GV G G TR+ ++ + T P + +TR H
Sbjct: 1227 PAPPGGRGVVGHGLTRSLGLNSAATARRSTLKPLHWVKVTRAMH 1270
>02_03_0085 + 15063444-15063889,15064324-15065311
Length = 477
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +3
Query: 129 RYNERGLAPPPNPPPDEGVAGSGKTRTEYCDNVISPDAFTFNPRQKI 269
R RGL PPP P P +G E+C +I P P +I
Sbjct: 47 RRRSRGLPPPPPPSPHSTAGPAG----EFCKIIIVPTVALALPSHRI 89
>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
Length = 467
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 150 APPPNPPPDEGVAGSGKTRTE-YCDNV-ISPDAFTFNPRQKIIITRTKHFQIPM 305
A PP PPP G++R E + NV I F F+ R K + + Q+ M
Sbjct: 55 ASPPPPPPPAAAGAEGRSREEAFVQNVNICCAVFDFSDRGKDTTEKERKRQVLM 108
>09_02_0327 - 7284829-7284889,7284946-7286126
Length = 413
Score = 25.0 bits (52), Expect(2) = 5.5
Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Frame = +3
Query: 111 CVGEHSRYNER---GLAPPPNPPP 173
C S Y ER G PPP PPP
Sbjct: 36 CPSPASSYKERIIFGAHPPPPPPP 59
Score = 22.2 bits (45), Expect(2) = 5.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3
Query: 153 PPPNPPPDEG 182
PPP PPP G
Sbjct: 60 PPPPPPPPRG 69
>09_02_0236 - 6131072-6131639,6132047-6132180
Length = 233
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/65 (26%), Positives = 23/65 (35%)
Frame = +3
Query: 12 QVGTKNNHAYVRP*YNYIISGCTPTQARCRGRACVGEHSRYNERGLAPPPNPPPDEGVAG 191
++ + Y NYI +P A R+ PPP PPP EG
Sbjct: 88 KINVQEELQYASQLQNYITKFHSPAPDPTSAVATTALSRRHAIHLQPPPPLPPPPEGAFA 147
Query: 192 SGKTR 206
+G R
Sbjct: 148 AGSAR 152
>06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089
Length = 681
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 75 CTPTQARCRGRACVGEHSRYNERGLAPPPNPPP 173
C P Q+R + V S +RG +PPP P P
Sbjct: 39 CPPPQSRSLSFSPVSAVSTAGKRGRSPPPPPSP 71
>03_01_0210 + 1652040-1652186,1652446-1652853
Length = 184
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +3
Query: 69 SGCTPTQARCRGRACVGEHSRYNERGLAPP-PNPPPDEGVAGSGKTR 206
SG TP A RY++ G A P PPP +A G TR
Sbjct: 124 SGATPLLLAAAAAAGSNHTERYDDEGRASARPPPPPPPQLAVGGATR 170
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 25.0 bits (52), Expect(2) = 6.7
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 153 PPPNPPPDEGVAGSG 197
P P PPP G AG G
Sbjct: 366 PGPGPPPPPGAAGRG 380
Score = 21.8 bits (44), Expect(2) = 6.7
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3
Query: 144 GLAPPPNPPP 173
G PPP PPP
Sbjct: 346 GSGPPPPPPP 355
>08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671
Length = 502
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 117 GEHSRYNERGLAPPPNPPPDEGVAGSGKTRTEYCDNVISPDAFTFN 254
G H R ER PPP D+ G + + C +++ D F ++
Sbjct: 79 GRHFRLLERPPPPPPWLAADDRGGGGWRPACDACGDLLRGDGFAYH 124
>02_01_0763 -
5665010-5665202,5665285-5665375,5665460-5666245,
5667745-5668225
Length = 516
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Frame = +3
Query: 138 ERGLAP---PPNPPPDEGVAGSGKTRTEYCD 221
E GLA PP PPP+EG G + CD
Sbjct: 80 EAGLAALHLPPPPPPEEGGGGYARELLRACD 110
>02_01_0562 +
4129852-4130235,4130355-4130453,4131046-4131146,
4131229-4131300,4131712-4131802,4132005-4132085,
4132263-4132331,4132634-4132690,4132776-4132898,
4133000-4133038,4133255-4133380
Length = 413
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -3
Query: 110 SAPSAPRLRGSAPRN-YIIVLWSYICMVIFSAY 15
+A PR RG+A + +IIVL S +C+ + AY
Sbjct: 15 TAMPPPRQRGAAKKPMWIIVLLSLVCVALIGAY 47
>08_02_1204 -
25267546-25268219,25268319-25268452,25269567-25269661,
25270289-25270304,25270635-25270684,25270960-25271331
Length = 446
Score = 23.8 bits (49), Expect(2) = 9.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +3
Query: 102 GRACVGEHSRYNERGLAPPPNPPP 173
GR G++ APPP PPP
Sbjct: 78 GRGGGGKNKGKGVAAAAPPPPPPP 101
Score = 22.6 bits (46), Expect(2) = 9.2
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 153 PPPNPPPDEGVAGSG 197
PPP PPP V G G
Sbjct: 96 PPPPPPPRCQVEGCG 110
>03_05_0777 + 27636342-27637115
Length = 257
Score = 25.4 bits (53), Expect(2) = 9.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3
Query: 138 ERGLAPPPNPPP 173
ER L PPP PPP
Sbjct: 205 ERALQPPPPPPP 216
Score = 21.0 bits (42), Expect(2) = 9.7
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 153 PPPNPPPDEGVAGS 194
PPP PP + G A S
Sbjct: 212 PPPPPPAEPGDAES 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,752,260
Number of Sequences: 37544
Number of extensions: 341250
Number of successful extensions: 2047
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1939
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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