Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_J01
(847 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81537-8|CAB04380.1| 343|Caenorhabditis elegans Hypothetical pr... 29 4.2
AF067219-2|AAC17035.1| 74|Caenorhabditis elegans Hypothetical ... 29 4.2
U00065-2|AAL27237.1| 672|Caenorhabditis elegans Prion-like-(q/n... 29 5.5
AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein. 29 5.5
AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein. 29 5.5
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 29 5.5
AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cel... 29 5.5
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 28 7.3
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 28 7.3
AF043693-4|AAB97538.1| 971|Caenorhabditis elegans Hypothetical ... 28 7.3
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 24 7.6
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 25 8.2
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 25 8.2
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 25 8.5
>Z81537-8|CAB04380.1| 343|Caenorhabditis elegans Hypothetical
protein F41D3.9 protein.
Length = 343
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +3
Query: 489 RVLFLKFVFFVNYCYLSGFSNM---KRNTTQYNTIKNSVNSTGHN*CLLGDIQLNANCKC 659
R LFL FV ++CY F N+ K + K+++ +N C LN+ K
Sbjct: 5 RRLFLSFVVIWSFCYF--FINVPADKHPKQEVCVCKSAITGKSYNFCYRDPQNLNSIGKK 62
Query: 660 HKLSILNALE 689
S+L+ LE
Sbjct: 63 FNCSLLSTLE 72
>AF067219-2|AAC17035.1| 74|Caenorhabditis elegans Hypothetical
protein R12E2.14 protein.
Length = 74
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = +3
Query: 75 CTPTQARCRGRACVGEHSRYNERGLAPPPNPPPDEGVAGSG 197
C P Q C G C G +Y APPP PPP A G
Sbjct: 31 CPPAQPGC-GNPCQGAGPQY---AAAPPP-PPPQYAAAPQG 66
>U00065-2|AAL27237.1| 672|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 25
protein.
Length = 672
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 576 NTIKNSVNSTGHN*CLLGDIQLNANC 653
NT N+ +S G+N CL G +N C
Sbjct: 146 NTNSNTCSSNGNNGCLAGQTMVNGQC 171
>AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein.
Length = 691
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +3
Query: 120 EHSRYNERGLAPPPNPPPDEGVAGSGKTRTEYCDNVISPDAFTFNPRQKIII 275
+H ++ LAP +PPP + + Y N++ P+ P ++ II
Sbjct: 390 QHHQHRPIMLAPRHHPPPPPHFTPNQRAAAPYHPNMVQPNRLAAMPHRRPII 441
>AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein.
Length = 728
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +3
Query: 120 EHSRYNERGLAPPPNPPPDEGVAGSGKTRTEYCDNVISPDAFTFNPRQKIII 275
+H ++ LAP +PPP + + Y N++ P+ P ++ II
Sbjct: 427 QHHQHRPIMLAPRHHPPPPPHFTPNQRAAAPYHPNMVQPNRLAAMPHRRPII 478
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +3
Query: 81 PTQARCRGRACVGEHSRYNERGLAPPPNPPPDEGVAGSG 197
P Q G+ G SR G A PP PP + G G G
Sbjct: 238 PGQPGRPGKNAQGGSSRPGPPGPAGPPGPPGNNGAPGGG 276
>AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform a protein.
Length = 728
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +3
Query: 120 EHSRYNERGLAPPPNPPPDEGVAGSGKTRTEYCDNVISPDAFTFNPRQKIII 275
+H ++ LAP +PPP + + Y N++ P+ P ++ II
Sbjct: 427 QHHQHRPIMLAPRHHPPPPPHFTPNQRAAAPYHPNMVQPNRLAAMPHRRPII 478
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +3
Query: 126 SRYNERGLAP--PPNPPPDEGVAGSGKTR 206
+R GLAP PP PPP G G +R
Sbjct: 562 TRVESHGLAPARPPPPPPSSGTRGIAPSR 590
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +3
Query: 126 SRYNERGLAP--PPNPPPDEGVAGSGKTR 206
+R GLAP PP PPP G G +R
Sbjct: 388 TRVESHGLAPARPPPPPPSSGTRGIAPSR 416
>AF043693-4|AAB97538.1| 971|Caenorhabditis elegans Hypothetical
protein C34B2.6 protein.
Length = 971
Score = 28.3 bits (60), Expect = 7.3
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Frame = +3
Query: 66 ISGCTP-TQARCRGRACVGEHSRYNERGLAPPPNPPP-DEGVAGSGK--TRTEYCDNVIS 233
I TP + GR G+ + L PPP+PPP VA + TE + +
Sbjct: 186 IDEITPKNETPLNGRRARGKRAASATSPLTPPPSPPPLAPSVASVAPEISATEEKEEKTT 245
Query: 234 PDAFTFNPRQK-IIITRTKH 290
P + T ++K II+ RT++
Sbjct: 246 PPSATGEKQKKGIIMVRTEN 265
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 23.8 bits (49), Expect(2) = 7.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 153 PPPNPPPDEGVAG 191
PPP PPP G+ G
Sbjct: 589 PPPPPPPPGGLMG 601
Score = 22.6 bits (46), Expect(2) = 7.6
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +3
Query: 135 NERGLAPPPNPPP 173
N G PPP PPP
Sbjct: 571 NLSGAPPPPPPPP 583
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 24.6 bits (51), Expect(2) = 8.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 153 PPPNPPPDEGVAGSG 197
PPP PPP + +A SG
Sbjct: 250 PPPPPPPAQLMASSG 264
Score = 21.8 bits (44), Expect(2) = 8.2
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3
Query: 144 GLAPPPNPPP 173
G PPP PPP
Sbjct: 245 GAPPPPPPPP 254
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 24.6 bits (51), Expect(2) = 8.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 153 PPPNPPPDEGVAGSG 197
PPP PPP + +A SG
Sbjct: 236 PPPPPPPAQLMASSG 250
Score = 21.8 bits (44), Expect(2) = 8.2
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3
Query: 144 GLAPPPNPPP 173
G PPP PPP
Sbjct: 231 GAPPPPPPPP 240
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 24.6 bits (51), Expect(2) = 8.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 153 PPPNPPPDEGVAGSG 197
PPP PPP + +A SG
Sbjct: 236 PPPPPPPAQLMASSG 250
Score = 21.8 bits (44), Expect(2) = 8.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3
Query: 144 GLAPPPNPPP 173
G PPP PPP
Sbjct: 231 GAPPPPPPPP 240
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,494,802
Number of Sequences: 27780
Number of extensions: 327814
Number of successful extensions: 1319
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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