Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_I08
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    26   6.7  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   8.9  
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             25   8.9  
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    25   8.9  

>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 320 NLHQQKWFELNRKNDKRMLRACTNIQQRLPMCFI 219
           N  Q+K   L    +K   R C  I+   PMCF+
Sbjct: 611 NPDQEKKLRLAFSKEKGYRRLCFKIKGNSPMCFV 644


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 237 PLLYV-CTCSKHSLIVLTIQFKPFLLM 314
           P +Y+ C CSKH   +  +  KP + M
Sbjct: 36  PSIYILCHCSKHQEEITILALKPLIAM 62


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 308 VDGDYNMLMFHDKYHPCTK 364
           +DG ++  + HDK+  CTK
Sbjct: 429 IDGKHSHSLHHDKFDACTK 447


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 180 HFYHLSTRLNLESNS*M*DNKFIYCFCKETR 88
           HF H+   L+L SN  +  N F+   C  T+
Sbjct: 208 HFSHIEWNLHLRSNKSIVVNNFVGQLCSRTQ 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,036,872
Number of Sequences: 5004
Number of extensions: 61654
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)