Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_I07
         (356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   141   3e-35
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   140   8e-35
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    29   0.28 
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   1.1  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   3.5  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    25   3.5  
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    25   4.6  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   4.6  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    24   6.1  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    24   8.0  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    24   8.0  

>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  141 bits (342), Expect = 3e-35
 Identities = 68/109 (62%), Positives = 79/109 (72%)
 Frame = -1

Query: 338 RYLQSIAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAV 159
           R  +  AEE           L+SYWV QD++YK+FEVILVDPSHKAIRRDP+INWIVN V
Sbjct: 96  RSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPV 155

Query: 158 HKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 12
           HKHRE RGLTS G+ SRG+GKGHRY+ +    + A WLR NTL LRR R
Sbjct: 156 HKHRESRGLTSIGKKSRGIGKGHRYNNS---PQHATWLRHNTLSLRRYR 201


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  140 bits (338), Expect = 8e-35
 Identities = 67/109 (61%), Positives = 79/109 (72%)
 Frame = -1

Query: 338 RYLQSIAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAV 159
           R  +  AEE           L+SYWV QD++YK+FEVILVDPSHKAIRRDP+INWIVN V
Sbjct: 96  RSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPV 155

Query: 158 HKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 12
           HKHRE RGLTS G+ SRG+GKGHR++ +    + A WLR NTL LRR R
Sbjct: 156 HKHRESRGLTSIGKKSRGIGKGHRFNNS---PQHATWLRHNTLSLRRYR 201


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 28.7 bits (61), Expect = 0.28
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 262 LHKILHTSISRLSSWTRHTRPFVAILRSTGS*MLYISI 149
           L+KIL  S  ++ ++T H  P V ++ S     LYIS+
Sbjct: 47  LYKILQISAPKVGNFTIHDAPVVGLIDSILEYYLYISV 84


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 257  QDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHK 153
            +  S KY E     P H  +   PK  WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 300 SLRWSPCVELLLGCTRFF 247
           SL+  P V LL+G TRFF
Sbjct: 568 SLKVPPLVPLLIGTTRFF 585


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 134 LTSAGRSSRGLGKG-HRYSQTKGGSRRAAWLRRN 36
           ++SAG S  G GKG +    T   +RRAA   RN
Sbjct: 236 VSSAGYSGEGYGKGTYATDTTAEANRRAATGTRN 269


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -1

Query: 218 DPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKG-HRYSQTKGG 66
           DPS+  +   PK+N       K   +     +G+  RG G+G +R  + +GG
Sbjct: 329 DPSNGVVDGTPKLNSNTRGSSKRPSVNRSQGSGQRGRG-GRGFYRGGRGRGG 379


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 312 TCWPSLRWSPCVELLLGCT 256
           +C PS R  P +ELLL C+
Sbjct: 595 SCGPSYRLLPKIELLLPCS 613


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 263 PSKSSTHGDHRNDGQHVPQQ 322
           PS+SS   D ++D QHV +Q
Sbjct: 254 PSRSSDTNDPQSDSQHVLRQ 273


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 248 KNLVQPSKSSTHGDHRNDGQHVP 316
           KN   PS  +TH  H+ND  ++P
Sbjct: 33  KNKAYPS--TTHDPHQNDDSNIP 53


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -1

Query: 200 IRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRY 84
           +R   ++ WI N +H+ R  R L     S R  G    Y
Sbjct: 39  VRVSMRLKWISNRIHRIRRSRRLGRLSISVRPNGSWQVY 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,303,083
Number of Sequences: 5004
Number of extensions: 22073
Number of successful extensions: 60
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)