Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_I04
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   154   1e-38
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    26   4.2  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    26   5.5  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    26   5.5  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    25   7.3  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    25   7.3  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   7.3  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  154 bits (373), Expect = 1e-38
 Identities = 72/112 (64%), Positives = 84/112 (75%)
 Frame = -2

Query: 650 KHGFHVHEFGDNTNGCTSXGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQ 471
           K GFH+H+FGDNTNGCTS G HFNPE + HG  ++AVRHVGDLGN+E+ +  G  K +  
Sbjct: 43  KRGFHIHQFGDNTNGCTSAGPHFNPEGKTHGDRTAAVRHVGDLGNLES-DAQGNIKTTFS 101

Query: 470 DSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGLA 315
           DS ISL G NSIIGRT+V+HA  DDLG G  E S  TGNAG R ACGVIG+A
Sbjct: 102 DSVISLFGANSIIGRTIVIHAGEDDLGKGTSEESLKTGNAGARNACGVIGIA 153


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
 Frame = -2

Query: 527 DLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAG 348
           D+ NI+  ++  + ++++   Q++    N  + R +    +   L L  H L+   G AG
Sbjct: 431 DIINIDIEKEKTIEEIAMGFIQVA----NETMCRPIRKLTESRGLDLSAHHLA-VFGGAG 485

Query: 347 GRIACGV---IGLAKI*IHTF 294
           G+ AC +   + + KI IH +
Sbjct: 486 GQHACAIASLLNIEKIIIHKY 506


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 545 AVRHVGDLGNIEAIEDSGVTKVSIQDSQ 462
           A R   DL NI  +ED  V+  S+ DS+
Sbjct: 231 AKRERDDLKNIMQLEDESVSTTSVHDSE 258


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 583 STLKNKIMVVPVLLYAMSATSVTLRQLKTLESLK 482
           STLK + +  PV L A+    ++LR L   ESL+
Sbjct: 326 STLKRRHVRAPVSLDAVDGIELSLRDLNDEESLQ 359


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
 Frame = +3

Query: 285 T*EKCMYLNLGQANDSTSNTATSITSGLT*LMATQ----SQVIRVSMDN*SATNDAVRSM 452
           T +K    N   + D+ S+  TS + G++ +   +    S  + ++ ++ S+TND +R +
Sbjct: 492 TFDKAQLSNTEDSYDNISH-GTSYSEGVSSIHMVKGERGSNNLELTSESLSSTNDTIRRL 550

Query: 453 KRDL 464
           +RDL
Sbjct: 551 QRDL 554


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 415 TTKVRPMMLLGP*REIWESWIDTLVTP 495
           +T + P  LL    E+WE   DT +TP
Sbjct: 78  STLIEPNYLLTAWHELWEELQDTYMTP 104


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -3

Query: 589  LISTLKNKIMVVPVLLYAMSATSVTLRQLKTLES-LKYQSKIPRSLFM 449
            L++T  +  + +PVLLY +   ++ +  L++ ES  + + KI  +L M
Sbjct: 1130 LLNTASHTAVKLPVLLYILDTLNLVITHLQSEESESQLREKILANLVM 1177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,155
Number of Sequences: 5004
Number of extensions: 53331
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)