Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_I04
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 174 6e-44
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 169 2e-42
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 160 8e-40
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 128 3e-30
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 49 3e-06
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 33 0.15
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260... 30 1.9
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 29 4.3
11_06_0756 + 26952196-26952264,26952760-26953206,26954009-269553... 28 5.7
02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810 28 5.7
07_03_0716 + 20905041-20905851,20906644-20906825,20907117-209073... 28 7.6
03_06_0131 - 31900700-31900992,31901039-31901720 28 7.6
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 174 bits (423), Expect = 6e-44
Identities = 76/112 (67%), Positives = 86/112 (76%)
Frame = -2
Query: 653 GKHGFHVHEFGDNTNGCTSXGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSI 474
G HGFH+H GD TNGC S G H+NP ++HG P RH GDLGN+ A ED GV + +
Sbjct: 158 GLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGED-GVANIHV 216
Query: 473 QDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGL 318
DSQI L GPNSIIGR +VVHADPDDLG GGHELSKTTGNAGGR+ACG+IGL
Sbjct: 217 VDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 268
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 169 bits (411), Expect = 2e-42
Identities = 77/112 (68%), Positives = 85/112 (75%)
Frame = -2
Query: 653 GKHGFHVHEFGDNTNGCTSXGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSI 474
G HGFHVH GD TNGC S G HFNP ++HG P RH GDLGNI A D GV V++
Sbjct: 40 GLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGAD-GVANVNV 98
Query: 473 QDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGL 318
DSQI L G +SIIGR +VVHADPDDLG GGHELSKTTGNAGGR+ACG+IGL
Sbjct: 99 SDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 160 bits (389), Expect = 8e-40
Identities = 72/115 (62%), Positives = 82/115 (71%)
Frame = -2
Query: 653 GKHGFHVHEFGDNTNGCTSXGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSI 474
G HGFH+HEFGD TNGC S G HFNP HG P VRH GDLGNI A + GV + +I
Sbjct: 90 GLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAE-GVAEATI 148
Query: 473 QDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGLAKI 309
D QI L GPNS++GR VVH DDLG GGHELS +TGNAGGR+ACGV+GL +
Sbjct: 149 VDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLTPL 203
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 128 bits (310), Expect = 3e-30
Identities = 58/90 (64%), Positives = 66/90 (73%)
Frame = -2
Query: 653 GKHGFHVHEFGDNTNGCTSXGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSI 474
G HGFH+H FGD TNGC S G HFNP + HG PS RHVGDLGNI A +D GV + I
Sbjct: 50 GLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGAPSDDERHVGDLGNIVANKD-GVADIFI 108
Query: 473 QDSQISLHGPNSIIGRTLVVHADPDDLGLG 384
+D QISL GP+SI+GR +VVHAD DDLG G
Sbjct: 109 KDLQISLSGPHSILGRAVVVHADSDDLGRG 138
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 49.2 bits (112), Expect = 3e-06
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Frame = -2
Query: 653 GKHGFHVHEFGDNTNGCTSXGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSI 474
GKHG+ ++EFGD T G S G +NP P +GDLG +EA E G + S
Sbjct: 202 GKHGWSINEFGDLTRGAESTGKVYNPSDYRSNKP------LGDLGTLEAGE-KGEAQFSA 254
Query: 473 QDSQISLHGPNSIIGRTLVVHA--DPDDLGLGGHELSKTTG 357
++ + +IGR++ ++A D D G+ ++++ G
Sbjct: 255 SKEKLKV---VDLIGRSIALYATEDRSDPGIAAAVIARSAG 292
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -2
Query: 647 HGFHVHEFGDNTNGCTSXG 591
HGFHVH G TNGC G
Sbjct: 51 HGFHVHALGGTTNGCMRNG 69
>02_01_0362 +
2607097-2607371,2607766-2608612,2608842-2608910,
2609968-2610202,2610454-2610536,2610924-2611046,
2611326-2611379
Length = 561
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 344 GHQHYQWSYLAHGHPVPSHQGQHG 415
G QH W +AH HP+ S Q HG
Sbjct: 294 GDQHGDWIAIAHQHPLLSMQLSHG 317
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 449 GPNSIIGRTLVVHADPDDLGLGG 381
GP + +GR L+ +DP+D+G G
Sbjct: 1048 GPEATVGRPLLSSSDPEDIGTEG 1070
>11_06_0756 +
26952196-26952264,26952760-26953206,26954009-26955358,
26955400-26955408
Length = 624
Score = 28.3 bits (60), Expect = 5.7
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Frame = -2
Query: 593 GAHFNPEKQDH--GGPSSAVRHVGD--LGNIE---AIEDSGVTKVSIQDSQISLHGPNSI 435
GA +PE H G V D L NI A+ G+ V+ D+++SL
Sbjct: 222 GASHDPEALLHIAQGSRGTYSFVDDDNLANIAGALAVCLGGLKTVAAVDTRVSLKAAELS 281
Query: 434 IGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVI 324
G +V D GG+E S G A G + GV+
Sbjct: 282 GGGARIVRVDS-----GGYESSVACGGASGEVVVGVL 313
>02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810
Length = 472
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = -2
Query: 620 DNTNGCTSXGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPN 441
D TS GAH +P + H PSS + + + S T VS++ ++ PN
Sbjct: 15 DIVKAATSPGAHSSPLRPAHSSPSSTLSEASNTSS------SSATSVSLKRARAPRKRPN 68
>07_03_0716 +
20905041-20905851,20906644-20906825,20907117-20907330,
20907416-20907653,20907905-20908058,20908190-20908461,
20908703-20908808
Length = 658
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = +3
Query: 252 MKSLNIVVPSPT*EKCMYLNLGQANDSTSNTATSITSGLT*LMATQSQVIRVSMDN*SAT 431
+ S + +P P Y+ ++DS+ N + SIT L Q VI ++MD +
Sbjct: 586 LNSEEMTLPKPNQPAYFYVRSSGSDDSSCNNSISIT--LARQTVRQWTVISINMDGRVSG 643
Query: 432 NDAVRSMKRDLGILD 476
A+ K +L D
Sbjct: 644 RAAIFKSKYELSATD 658
>03_06_0131 - 31900700-31900992,31901039-31901720
Length = 324
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 527 DLGNIEAIEDSGVTKVSIQDSQISLHGPNS 438
D+ ++ + DSG +I +S HGPNS
Sbjct: 120 DVDHLSILTDSGAVHRAISGEPVSEHGPNS 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,265,667
Number of Sequences: 37544
Number of extensions: 346772
Number of successful extensions: 935
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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