Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_H15
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   3.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.1  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   9.6  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   9.6  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   9.6  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 648 IPYICKPSQNSAFPNLVKIVTDFKLFQECKIFT 746
           I  I K  +   FP+ +KI++  K  QE  IFT
Sbjct: 346 IEIIVKDPETLQFPSGMKIISSKKDRQELWIFT 378


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 642 WRIPYICKPSQNSAF 686
           WR PY+C  +   AF
Sbjct: 5   WRFPYLCYKNGGGAF 19


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 642 WRIPYICKPSQNSAF 686
           WR PY+C  +   AF
Sbjct: 43  WRFPYLCYKNGGGAF 57



 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 640 SIWGLLF*ELSVFITIKQMFCSLGIKLFGMSSEELNLVRK 521
           SIW  LF  + + I +   FC++   +     E   L+RK
Sbjct: 374 SIWSCLFFFMLILIGLDSQFCTVEGFITAAVDEWPRLLRK 413


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 642 WRIPYICKPSQNSAF 686
           WR PY+C  +   AF
Sbjct: 96  WRFPYLCYKNGGGAF 110



 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 640 SIWGLLF*ELSVFITIKQMFCSLGIKLFGMSSEELNLVRK 521
           SIW  LF  + + I +   FC++   +     E   L+RK
Sbjct: 427 SIWSCLFFFMLILIGLDSQFCTVEGFITAAVDEWPRLLRK 466


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 500 GYIFI*IKKRVHTVFDLDY 444
           GY+   +   ++T+F+LDY
Sbjct: 370 GYVNSALNPLIYTIFNLDY 388


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 500 GYIFI*IKKRVHTVFDLDY 444
           GY+   +   ++T+F+LDY
Sbjct: 370 GYVNSALNPLIYTIFNLDY 388


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 500 GYIFI*IKKRVHTVFDLDY 444
           GY+   +   ++T+F+LDY
Sbjct: 370 GYVNSALNPLIYTIFNLDY 388


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,251
Number of Sequences: 438
Number of extensions: 3999
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)