Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_H13
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z77136-8|CAB00885.2|  278|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z68117-4|CAA92180.1|  589|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U61948-7|AAB03148.1|  195|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical
           protein M70.1 protein.
          Length = 931

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 618 KKIDXAPTVESDAAAVPEIKTPEAADAPKLADNPVDEDKPADI 490
           KK D  P+       VP   TP+ A  P     P  ++KP D+
Sbjct: 812 KKKDTKPSAPKPKPDVPVNPTPQTAKVPVAPAPPAKDEKPKDV 854


>Z77136-8|CAB00885.2|  278|Caenorhabditis elegans Hypothetical
           protein ZC376.8 protein.
          Length = 278

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -3

Query: 630 PNMVKKIDXAPTVESDAAAVPEIKTPEAADAPKLAD 523
           P   K +  AP+ ES     P  K PE   AP  AD
Sbjct: 37  PKKKKDVSGAPSAESPPPPPPAPKVPEPPKAPPPAD 72


>Z68117-4|CAA92180.1|  589|Caenorhabditis elegans Hypothetical
           protein F45E6.2 protein.
          Length = 589

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
 Frame = -1

Query: 350 PQKVRNHLTNPNLKKTNLR*TAEALSGGRVLTVFDTRPLLAANTLTRAPL---PTREIN- 183
           P  V N+L   N        T+     GRV+T  D+ P+  A   T+ P+   P    N 
Sbjct: 342 PFNVDNNLNINNQIMAISNETSMVARHGRVITYEDSAPV--AKIPTQQPIHNYPNSTQND 399

Query: 182 CSIYV*NYPM*VRVAFSTPRWITVYFLD 99
           C +Y  N    +RV     RW+ V+  D
Sbjct: 400 CDMYKLNATETIRVNNDIERWVQVHSFD 427


>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
           protein F54D11.2 protein.
          Length = 1145

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 639 PIIPNMVKKIDXAPTVESDAAAVPEIKTPEAADA 538
           P++P    KI+ APT  S   + P    P  A A
Sbjct: 214 PLVPEKKPKIEDAPTTSSPKKSTPTSAPPTRASA 247


>U61948-7|AAB03148.1|  195|Caenorhabditis elegans Hypothetical
           protein C46A5.8 protein.
          Length = 195

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 40  STNNYIVGNFLISLFK*V-SRSRK*TVIHLGVENATLTHMG*FHTYMLQLISRVGSGARV 216
           ST + I+ NF+I+  + + SR  + T+  + ++N      G  HT     + RVGSG  +
Sbjct: 125 STRDQIIENFVIATHETIQSRKHEPTITEV-LKNFATGRSGSLHTVSHGELPRVGSGRNI 183

Query: 217 N 219
           +
Sbjct: 184 S 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,462,024
Number of Sequences: 27780
Number of extensions: 188393
Number of successful extensions: 441
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)