Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_H10
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0134 - 1224084-1224269,1224578-1224662,1224763-1225050,122...    30   1.5  
08_02_0253 - 14869109-14869146,14869424-14869710,14869848-14870167     30   1.9  
06_03_1076 + 27409107-27409204,27409731-27409835,27409915-274100...    28   5.9  
04_03_0497 + 16566601-16566696,16567026-16567102,16567903-165680...    28   5.9  
03_05_1063 + 30048724-30048753,30049036-30049175,30049282-300493...    28   5.9  

>01_01_0134 -
           1224084-1224269,1224578-1224662,1224763-1225050,
           1225114-1225334,1225511-1225642,1226218-1226494,
           1226722-1226770,1226993-1227088,1227779-1227911,
           1228241-1228391,1228484-1228674,1229167-1229382
          Length = 674

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +1

Query: 115 SYPNCVVFRKGLVNCSETSTGLLRYRSMATVTLLSLSVA 231
           SY N ++FR GLVNC+++  G  + R ++      LS+A
Sbjct: 175 SYVNDLLFRLGLVNCADSIVGDAKVRGISGGEKKRLSLA 213


>08_02_0253 - 14869109-14869146,14869424-14869710,14869848-14870167
          Length = 214

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = -2

Query: 173 VEVSLQFTNPFRKTTQLGYDHTHKELYSWD-----KGNQLTYPVRYNELPGP 33
           V+V +    P+R   +    H  ++  +W       G +LT P+RY E PGP
Sbjct: 79  VDVVMDGPRPWRGLLRRPSRHGSRQQVTWFLETYLPGTELTLPLRYKEFPGP 130


>06_03_1076 +
           27409107-27409204,27409731-27409835,27409915-27410032,
           27410180-27410230,27410328-27410419,27410558-27410657,
           27411018-27411137,27411227-27411295,27411468-27411514,
           27411597-27411652,27412293-27412333,27412570-27412675,
           27413891-27414023,27414096-27414645
          Length = 561

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -3

Query: 547 KRTSRDNRARSSDTTSHRAELNQH 476
           KR   DNR RS DT  HR E   H
Sbjct: 523 KRDESDNRKRSPDTGKHRREDGGH 546


>04_03_0497 +
           16566601-16566696,16567026-16567102,16567903-16568047,
           16568265-16568309,16568338-16569294,16569603-16569896,
           16571129-16571242,16571826-16571913,16571995-16572050,
           16572250-16572304,16572417-16572460
          Length = 656

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
 Frame = -2

Query: 653 RNXASFKSDHVDEF-HKXQKPXYGNGHIVYGGSFFYQANESGQPGEIIRYDLTQSRIKSA 477
           R+  S  + + +EF H   +      H+V   S +  + ESG   E I  D     + S 
Sbjct: 275 RDKTSEDAGNQNEFIHSDAEYQEAGSHLVNSDSIYGMSTESGNQNEFIHADAEHQEVGS- 333

Query: 476 HLPYADGRLYTSQHNQV 426
           H+  +D     S  N +
Sbjct: 334 HVVNSDSNFDMSTDNMI 350


>03_05_1063 +
           30048724-30048753,30049036-30049175,30049282-30049336,
           30049419-30049526,30050190-30050288,30050380-30050457,
           30050558-30050635,30051875-30051949,30052117-30052217,
           30052502-30052527,30053224-30053297,30053358-30053379,
           30054108-30054223,30054361-30054618,30054716-30054832,
           30055649-30055699,30055859-30056086,30056550-30056648,
           30056823-30056999,30057298-30057417
          Length = 683

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +3

Query: 513 DDLARLSRLVRLVEEGAAVHNVPVTVXRFLXFVELVDVVRFETGXVPVF 659
           +++ +L R   L+ +   ++++P  + + +      D VRF TG  P+F
Sbjct: 95  ENIEKLHRTRNLLRKVQFIYDLPTRLNKCIKTEAYADAVRFFTGAKPIF 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,076,138
Number of Sequences: 37544
Number of extensions: 378385
Number of successful extensions: 892
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)