Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_H10
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.6  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   4.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 517  SSDTTSHRAELNQHIFRTLMDDCTLHNITRW 425
            S  +  HR  L++HI+ ++  D +    T W
Sbjct: 1320 SGSSEDHRRPLSEHIYSSIDSDYSTLERTAW 1350


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +1

Query: 130 VVFRKGLVNCSETSTGLLRYRSMATVT---LLSLSVAE 234
           V+F  GLV    T   + R +SM T T   L SL+V++
Sbjct: 62  VIFVTGLVGNVSTCVVIARNKSMHTATNYYLFSLAVSD 99


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -1

Query: 84  QRQPVNLSC*VQRITGTLM 28
           +RQPV L+  V++++GTL+
Sbjct: 255 RRQPVQLNERVRQVSGTLI 273


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 182 SGTGLWQLSPYCLC 223
           SG+ +WQ+   C+C
Sbjct: 64  SGSKIWQMERSCMC 77


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
          protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 95 YSWDKGNQLTYPVRYNEL 42
          ++W  GN+ TY VR   L
Sbjct: 20 HNWQVGNEYTYLVRSRTL 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,808
Number of Sequences: 438
Number of extensions: 4237
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)